Lmon030302.1
Basic Information
- Insect
- Lymantria monacha
- Gene Symbol
- -
- Assembly
- GCA_905163515.1
- Location
- LR991102.1:13003565-13004269[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.5e-06 0.0006 20.6 0.0 1 37 18 54 18 61 0.89 2 2 6.5 1.6e+03 0.1 0.1 13 23 139 150 136 152 0.70
Sequence Information
- Coding Sequence
- ATGCCACGCAAATACGTGCGTAAAGCAGGGGCACATCCTCGAGGTACCTGGACAGAAGATGCCCTTATAGACGCCTTTGAAGAGCTGAggcaaaataaatatggtataAATGAAATATCTCGTCGTTACGGAATTCCAGCCAGAACCCTAAGAAGACGATTTGCTAAacaagatacaaaaaaaatcacattagggaAACACCCAGTTCTGGATTTCGATAATGAAAAACGGCTTGTCGCACACatccaaaaactagagactGCAGGGTTTCCTGTAACACGAGATACGGTACAAAGACTAGCTTTTCAATTCGCTGAAAAGCTTGGTATTGAACATAACTTTAATAAAGAAACACGTAAAGCTGGACCTCATTGGTTACAATCTTTTCTGGAACGCCAACCAAGACTTAGCGTCCGACAAGCTGAAGGATTATCTCTTGCCCGAGCTCAGGGACTTAATCGTGAGGAAGTCGACAATATGTTTAAGCTTTTGCTTCAAGTCTTAACAGAGCATGATTTACTAGACAAACCAGATCGTATATTTAATGTAGACGAAACTGGTGTCCAGTTAAGAGTTGTCTTTTTCTTTTACTACGGGTTTTTATACCTTTAG
- Protein Sequence
- MPRKYVRKAGAHPRGTWTEDALIDAFEELRQNKYGINEISRRYGIPARTLRRRFAKQDTKKITLGKHPVLDFDNEKRLVAHIQKLETAGFPVTRDTVQRLAFQFAEKLGIEHNFNKETRKAGPHWLQSFLERQPRLSVRQAEGLSLARAQGLNREEVDNMFKLLLQVLTEHDLLDKPDRIFNVDETGVQLRVVFFFYYGFLYL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00932463;
- 90% Identity
- iTF_00932463; iTF_00932468;
- 80% Identity
- -