Lmon034184.1
Basic Information
- Insect
- Lymantria monacha
- Gene Symbol
- -
- Assembly
- GCA_905163515.1
- Location
- LR991105.1:7616802-7619062[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.6e-10 8.7e-08 32.9 0.0 2 37 28 63 27 67 0.95 2 2 6.1 1.5e+03 0.2 0.0 22 30 153 161 142 162 0.71
Sequence Information
- Coding Sequence
- ATGGGCCCAACGGTGTATAATAAATTGCCTAGACAAatgcCGCGTAATTACGAAAGGAAAACCCTGAGGGCTTCTTGGCCTAACACGGACTTAAATGAGGCTATGCAAAAAGTGCGAAATAAGGAGATGCGAGTCAACGAGGCTGCCAGGGTTTACAATATCCCTTCAAGAACCCTTAGACGACATCTGTTAACAGGAAAACTTAAAGAACCACTCGGGAGACCGCCTGTCTTTTCACAAGAGCACGAAAAACAACTAGTAGCTCATATCAAAAAATTGGAAAAGGTTGTCTTTGCACCCGACCGCAAGGATGTTAAAGAAATGGCTTACCAGTTAGCTCAAAAACTTAGCATTAAAAATCCATTCTCAAACGATACCCAAGCAGGTAATATTTGGTTCAACTGGTTCTTAAAACGTAATCCTGAATTGAGTCAGCGAAAGTCTGGAAGTTTGTCACTCGCTAGGGCTTATGGCGTTAATCGAGAAGATGTTAATGATTTTTTCACACTGCTGGCTCAGGTATACGAAGACAATAACTTAGGTCATCATCCagatcaaatatttaatatggatGAGACCGGCatccatataaataataaacctaCCACAGTAATTGCCAGCAAAGAAGCTAAAGATGTTTACACTTTGACTAGTTGCGAGAAAGGAGAAAATGTCACAGTCATAGCTTGCTGCAATGCTCAAGGTAACTTTATGCCAcctgttttaatttataaaggtACCTACAGTAAACCTCAGTTTTCTGAAGGACTGCCACCTGGTTCGCAAATATTTATGAACAAAAAGTCTTCATATATAAATTCTGAACTTTTCATGAAATGGTTCGAAGAGATATTCTTACAAAATAAAAGCCCTGGAAAATCTCTACTGATACTGGATGGTCATAGTGCACACAGTAACAATATTCGTATGTTAGAAGTGGCCATAGAGAATAATGTTACCTTGCTATGCTTACCAAGTCACACCACTCATGCACTCCAACCACTGGACAGGGCATTTTTCAGGCCTCTGAAGGTTTACTTTAACCAGGAAGCAAAGTCTTGGATGATCATGAACAAAGATAAGCGAAACACTCGGTATGATGTATCCAAACTGATTGATACGTTGCGAGAACAAGATCTCATAGATATTAatcaagaaaataataatgttaatgaaTTAGGTGCCTGTTATTCAAAAGTACACAACATTGATGACTATCGTGTAGAAACCGAACCAACAGCTTCGGCAGTGGCAATAACTGAAAACCATATGGGTCCGGATAGTGAATCTAcctataatatagaaaataggAGTGCAGATAATGTTGGACAAGTTTCTGTTCTTGCACCTGAAAAAACGCCTCAAAAAGGTCGAGAACTGCAGTCAGAATTTTTAGAAGAAACACCTACAAAAGTTTTGACTAACATTCATCCCATACCTAAATAA
- Protein Sequence
- MGPTVYNKLPRQMPRNYERKTLRASWPNTDLNEAMQKVRNKEMRVNEAARVYNIPSRTLRRHLLTGKLKEPLGRPPVFSQEHEKQLVAHIKKLEKVVFAPDRKDVKEMAYQLAQKLSIKNPFSNDTQAGNIWFNWFLKRNPELSQRKSGSLSLARAYGVNREDVNDFFTLLAQVYEDNNLGHHPDQIFNMDETGIHINNKPTTVIASKEAKDVYTLTSCEKGENVTVIACCNAQGNFMPPVLIYKGTYSKPQFSEGLPPGSQIFMNKKSSYINSELFMKWFEEIFLQNKSPGKSLLILDGHSAHSNNIRMLEVAIENNVTLLCLPSHTTHALQPLDRAFFRPLKVYFNQEAKSWMIMNKDKRNTRYDVSKLIDTLREQDLIDINQENNNVNELGACYSKVHNIDDYRVETEPTASAVAITENHMGPDSESTYNIENRSADNVGQVSVLAPEKTPQKGRELQSEFLEETPTKVLTNIHPIPK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00932423;
- 90% Identity
- -
- 80% Identity
- -