Lmon023313.1
Basic Information
- Insect
- Lymantria monacha
- Gene Symbol
- -
- Assembly
- GCA_905163515.1
- Location
- LR991096.1:28063333-28072749[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.5e-12 1.3e-09 38.7 0.0 4 39 61 97 58 101 0.89 2 4 1.5e-10 3.6e-08 34.2 0.3 2 39 113 150 112 154 0.92 3 4 5.5e-14 1.4e-11 45.1 0.0 2 45 168 212 167 212 0.96 4 4 1.1e-16 2.6e-14 53.8 0.0 2 44 220 263 219 264 0.95
Sequence Information
- Coding Sequence
- atgatgaagtacagctacgataagcgcaacagcacatcatCACGGATACAAGAAGAGAAGTTAAAAGATGCCTTGTGTTATTTAGAACAACTGCATCTTAGTGGAGATGACACGAGTGATTCTTGCGGTCAGCAGAATTCACCTGCACCACGGCACAGTCCCAAGAGCTGGACACAACAAGACATGGACAGAGCGCTTGACGCATTGAGGAATCACCAAATGAGTCTTACCAAGGCGTCAGCGACTTACGGTATTCCATCTACTACGCTTTGGCAACGTGCTCATAGACTGGGAATTGACACTCCGAAGAAGGAGGGTGCCGCCAAGTCGTGGAGTGAAGCAGATCTACGTGGTGCCCTGCACGCTCTCCGCGCTGGCGCTATTTCAGCTAATAAAGCTAGCAAAGCTTATGGCATACCAAGTAGTACATTATACAAGATAGCTCGCCGCGAAGGTATCCGATTGTCCGCTCCGTTCAATGCGGCGCCAACGTCGTGGCGGCGGGCTGACTTGCAGTTAGCGTTGGCATCGATACGCTGCGGTGCTAGTTCTGTACAACGTGCAGCTTCTACTTACGGAATACCTACTGGAACTCTGTATGGTCGGTGTAAGCGGGAAGGTATTGAATTATCCCGATCCAATCCAACACCGTGGTCAGAAAATGCTATGGGTGAAGCTCTCGAAGCTGTCAGAGTGGGTCAAATGTCAATAAACCAGGCGGCGATACATTTCAACTTGCCATATTCCTCGTTATATGGAAGATTTAAGAGGTGCAAATATCAAACGCagAGTATCACTCAGAACCAAGAACAAACTGCTGATATTCAGAAGACCGAAATGACTCTCCAACCTCTCGAAGTGCATCAATACTACCATCAAATACCTACTGCGTATGACCACGAGACGAACACATACACTCACATGTCCGAATATTCTCACGATACACATATGAACGATCAATACGGTCAATATTATACAAGTTTCAACAGTATTGCTACAAGTTGA
- Protein Sequence
- MMKYSYDKRNSTSSRIQEEKLKDALCYLEQLHLSGDDTSDSCGQQNSPAPRHSPKSWTQQDMDRALDALRNHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTSWRRADLQLALASIRCGASSVQRAASTYGIPTGTLYGRCKREGIELSRSNPTPWSENAMGEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKYQTQSITQNQEQTADIQKTEMTLQPLEVHQYYHQIPTAYDHETNTYTHMSEYSHDTHMNDQYGQYYTSFNSIATS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00425295;
- 90% Identity
- -
- 80% Identity
- -