Basic Information

Transcription Factor Domain

TF Family: CUT
Domain: Homeobox|CUT
PFAM: PF02376
TF Group: Helix-turn-helix
Description: The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.019 1.3e+02 3.8 0.1 58 70 6 18 1 24 0.84

2 14 0.0075 53 5.1 0.2 58 73 27 42 20 46 0.87

3 14 0.018 1.3e+02 3.9 0.1 57 70 47 60 42 67 0.84

4 14 0.018 1.2e+02 3.9 0.1 57 70 68 81 62 87 0.83

5 14 0.018 1.3e+02 3.9 0.1 57 70 89 102 84 109 0.84

6 14 0.018 1.3e+02 3.9 0.1 57 70 110 123 104 128 0.83

7 14 0.018 1.2e+02 3.9 0.1 57 70 131 144 125 149 0.83

8 14 0.0086 60 4.9 0.1 53 70 148 165 143 171 0.83

9 14 0.017 1.2e+02 4.0 0.1 57 70 173 186 167 193 0.84

10 14 0.018 1.3e+02 3.9 0.1 57 70 194 207 188 212 0.83

11 14 0.018 1.2e+02 3.9 0.1 57 70 215 228 209 233 0.83

12 14 0.019 1.3e+02 3.8 0.1 57 70 236 249 231 254 0.83

13 14 0.021 1.5e+02 3.7 0.1 54 70 254 270 251 276 0.82

14 14 0.018 1.3e+02 3.9 0.1 57 70 278 291 272 296 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.019	1.3e+02	3.8	0.1	58	70	6	18	1	24	0.84
2	14	0.0075	53	5.1	0.2	58	73	27	42	20	46	0.87
3	14	0.018	1.3e+02	3.9	0.1	57	70	47	60	42	67	0.84
4	14	0.018	1.2e+02	3.9	0.1	57	70	68	81	62	87	0.83
5	14	0.018	1.3e+02	3.9	0.1	57	70	89	102	84	109	0.84
6	14	0.018	1.3e+02	3.9	0.1	57	70	110	123	104	128	0.83
7	14	0.018	1.2e+02	3.9	0.1	57	70	131	144	125	149	0.83
8	14	0.0086	60	4.9	0.1	53	70	148	165	143	171	0.83
9	14	0.017	1.2e+02	4.0	0.1	57	70	173	186	167	193	0.84
10	14	0.018	1.3e+02	3.9	0.1	57	70	194	207	188	212	0.83
11	14	0.018	1.2e+02	3.9	0.1	57	70	215	228	209	233	0.83
12	14	0.019	1.3e+02	3.8	0.1	57	70	236	249	231	254	0.83
13	14	0.021	1.5e+02	3.7	0.1	54	70	254	270	251	276	0.82
14	14	0.018	1.3e+02	3.9	0.1	57	70	278	291	272	296	0.83

Coding Sequence: ATGCTTATGTCTAACAGCGTCTTCGTTAGATTAAATGAATGGATGAATAAATCCGGGCTTGAGATGCCCATGTTTAACAGCGTCTTCGTTAGATTAAATGAATGGATGAATAAATCCGAGCTTGAGATGCCCATGTCTAACAGCGTCTTCGTTAGATTAAATGAATGGATGAATAAATCCGGGCTTGAGATGCCCATGTCTAACAGCGTCTTCGTTAGATTAAATGAATGGATGAATAAATCCGGGCTTGAGATGCCCATGTCTAACAGCGTCTTCGTTAGATTAAATGAATGGATGAATAAATCCGGGCTTGAGATGCCCATGTCTAACAGCGTCTTCGTTAGATTAAATGAATGGATGAATAAATCCGGGCTGGAGATGCCCATGTCTAACAGCGTCTTCGTTAGATTAAATGAATGGATGAATAAATCCGGGCTTGAGATGTCCATGTCTAACAGCGTCTTCGTTAGATTAAATGAATGGATGAATAAATCCGGGCTTGAGATGCCCATGTCTAACAGCGTCTTCGTTAGATTAAATGAATGGATGAATAAATCCGGGCTTGAGATGCCCATGTCTAACAGCGTCTTCGTTAGATTAAATGAATGGATGAATAAATCCGGGCTTGAGATGCCCATGTCTAACAGCGTCTTCGTTAGATTAAATGAATGGATGAATAAATCCGGGCTGGAGATGCCCATGTCTAACAGCGTCTTCGTTAGATTAAATGAATGGATGAATAAATCCGGGCTTGAGATGTCCATGTCTAACAGCGTCTTCGTTAGATTAAATGAATGGATCAATAAATCCGGGCTTGAGATGCCTATGTCTAACAGCGTCTTCGTTAGATTAAATGAATGGATGAATAAATCCGGGCTTGAGATGCCTATGTCTAACAGCGTGTTCGTTAGATAA
Protein Sequence: MLMSNSVFVRLNEWMNKSGLEMPMFNSVFVRLNEWMNKSELEMPMSNSVFVRLNEWMNKSGLEMPMSNSVFVRLNEWMNKSGLEMPMSNSVFVRLNEWMNKSGLEMPMSNSVFVRLNEWMNKSGLEMPMSNSVFVRLNEWMNKSGLEMSMSNSVFVRLNEWMNKSGLEMPMSNSVFVRLNEWMNKSGLEMPMSNSVFVRLNEWMNKSGLEMPMSNSVFVRLNEWMNKSGLEMPMSNSVFVRLNEWMNKSGLEMSMSNSVFVRLNEWINKSGLEMPMSNSVFVRLNEWMNKSGLEMPMSNSVFVR*

Sequence clustering based on sequence similarity using MMseqs2