Ldis011069.1
Basic Information
- Insect
- Lymantria dispar
- Gene Symbol
- -
- Assembly
- GCA_032191425.1
- Location
- CM063446.1:26749314-26766222[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 3.1 3.7e+02 3.3 2.0 1 23 56 79 56 79 0.95 2 20 0.13 16 7.6 1.1 1 23 86 109 86 109 0.96 3 20 0.0021 0.26 13.2 1.0 2 23 231 252 230 252 0.97 4 20 1.7 2e+02 4.1 1.3 1 23 258 280 258 281 0.93 5 20 0.26 31 6.7 3.4 2 22 518 538 517 538 0.95 6 20 0.11 13 7.9 2.6 1 23 636 658 636 658 0.95 7 20 2.1 2.5e+02 3.8 0.3 2 23 797 818 796 818 0.95 8 20 0.0064 0.76 11.7 0.3 2 23 895 916 894 916 0.96 9 20 0.031 3.7 9.5 0.4 1 23 924 946 924 946 0.98 10 20 0.15 18 7.4 3.4 1 23 980 1002 980 1002 0.95 11 20 0.0003 0.036 15.9 4.0 1 23 1010 1032 1010 1032 0.99 12 20 0.28 33 6.6 1.8 1 23 1116 1138 1116 1138 0.98 13 20 5.2 6.2e+02 2.6 1.5 1 23 1192 1214 1192 1214 0.90 14 20 0.096 11 8.0 0.1 1 23 1220 1242 1220 1242 0.96 15 20 0.02 2.4 10.2 0.8 1 23 1310 1332 1310 1332 0.95 16 20 0.023 2.8 10.0 1.3 1 23 1338 1360 1338 1360 0.95 17 20 0.0084 1 11.4 2.6 1 23 1450 1472 1450 1472 0.97 18 20 0.00021 0.025 16.4 1.4 1 23 1478 1500 1478 1500 0.99 19 20 0.99 1.2e+02 4.8 3.0 1 23 1591 1613 1591 1613 0.96 20 20 0.0035 0.42 12.5 3.7 1 23 1624 1646 1624 1646 0.98
Sequence Information
- Coding Sequence
- ATGCTACAGCAGAATATGTCCTCGCCGCCGAGTGCACAACACGGCGAGGTCACGAGTACCTTCGGCCGCTACCGTGAGGGCCGCCTCTGCGGCGACGTATCTTCAGAGGGTTCCTCGGACGCAGCTGAGGATGCCGAGTTACCACAGTGCAAGATAAAAAGGAATTATAATTGCACCAAGTGCACGTTTCATACACAAAATCCGCGTGCTTATCTCGTACACACGCGAGATGCTCACTTTGTGAAACTTAAAATATTCGATTGTCCACAATGTATATACGCAGCTAAATACCAACATAAACTTACGAGACATATAAAAATGGTTCACGAAGGTCAAGAAGCAGAGAAGAAGAATTCAAAACCGTCTTCGTCGGTTAAAATGGATAGTGAGTTGTCAATGTCAATGTCATATGAAGCACCGACTGAATCTATGCGAATAGAAGATCTCGTGGAGGAAGTAGACGAATCTGAAGATATGATGATGGAAATCGAGGAAGGCCCTGATTATGCCATAGAACACGGCGATGACATAGACGTATTGGGTGAAAACATCTCAGAACAAGCAGCGCCCTCGAACTTGTCAAAAACAAAAGGAAACGTCAAATTTTTTACATGTGATAAGTGTACTTATGTCACCCACATAAGAACTAGATTCACTAAACACGTTAAATATCATTCAACACCTATGATCAAATGTACAATGTGCGATTTCCGAACACCATACAAATGGAACTTGGATCGTCATATGAAGAATCACGGCGGTACCGGTAGTTTTCGTTGCTCAATGTGCAACTTTACCGCGGACATCAAACAAAGTTTAACCGTGCATGAAATAAATCATCATACACCACCGCTGGGGCAGTTACTGTCGAGTCGCCGTCGCAACCGGGTGGGCGCCAGTGATACGGTTACCGCCGAATGCGACACAGCTAACGCGTCGCTCCCTAGGGAGGAAGAAGGGAGCGGCGACTCGCAATCCTCACATTCGGTCTCGGACATGGGCCTTCAGTACGCAGAAAGGGACGCGTTGAGCTGTAAAAGTGACTCTAACGATGGTACACACTCCGACGTCGCTCATAAGAAAGACAGTCTAGGATCACCTAACCACAGTTCCGATGAATCTAAACAAAAGCAAAGCAGAAAAGTGCCACGACCAATACCACAGCTCATACCGTTGAATACGTCGACCCCTAATCAAAAACCCACAGGCAATGGAGAACCACCCCTGAAAAAATTCAAAGAATCTTCACCAGTTGACTTAACTGATTCGAATTCAGGCAGCAAAATTGATAATTTACCTATCGATATTACTTTAATGCCCGTTAACAGTAATGGATCTAAAGAAACTATAGTTCGTAAAAAAAATGAGTCATTTTTTGATAGATTAAAAGAGAGATTATTAACAGAAACTGGAGAGGAAGGATCACTTAGGTGCAAAAACTGTGGGTTCGAAAGCAAATGTTTATCAGAACACTCTGTACATGAAAACAATTGTACTCCACAATCAAATCGCATTAACCCAAATTCATCACTATCCAGTTTAAGTTCGACGCGATGTCAAAATTGCAGACATAGATGTAAATCAAGTGCTGACTTATATATTCACATGCAAACTTGCGGTAAGAATGAAAAAGCTAAATCTAAAAATACAGTTGAGAATAGAAATCATAGCAATAACACCTCTACACCAAATCAAGATAAAGAAATTGAACGACATCCCATGGAAAACGTTGTTTTCGTTTGGAACAATATTGACCAAGATACTAACAAATTTGATGTACCTTTAGATATAAACATTAACGATGATTCTACCCTTCCGTCATTGAACAAGAACTTCGATATCGAGCTAGTTGATGAAAATGAAACTATGAATTTATCGCCGAGCCAAGCTGTAGgaagaaaagtatttaaatgTCCTCATTGTCCATTCTTTTCAACAACAGCGTCCAGATTTCATGTTCATATTGTTGGTCACTTGAACAAGAAACCGTTTGAATGTTCTCTGTGTAAATACAAATCTAACTGGAGATGGGATATCACTAAACATATTAAACTTAAGTCAGCTAGAGACCCTGAACATAATGAGGCAAAAGTTCTAATGACTGATGAGACAGGTAGAAGAAATTATAGCAAGTATAACAAATTCTTAGCAATGCCAGTATTAAACGAATATGGAGAAAATGAATTTCATTACCTAGAGTCCAACCCGTCGGTTGAAGGAACCATGGAAGTTGAAGATTCATTAAATGATGTATCAGAACTGATGCATACACAATATGAAATGCAACCACTTAATTTACATACGCAACAAATGGGCGACCAATATGACTTCCTCGACAATAGAGGTTTAAACATTAATGATTTGAAGAAACCCAAGAAAACTTTATGGAAATGCAAAAGATGTAATTACAGAGATCCATCAAAGGAAGCCCTATTGGAACATGTTCGTGAACATGCAAAGGATGGTGGACAAGAAGAACTTCACAAGGCAGGCGCTGCAAAGAAAACAGAGAATGGTCCTGATCCAGCAGACCTAGCATATCGTTGTGGCCACTGTCATCAACTGTCTAATTGGAAACACGTGATACAGagaCACTGCCGATTAAAACATGAAGgaataataaaagttataacAACAGTGAAGCCTAAGCCGGAGCCGTTGAACATTAACGAACTCAATGATACATGCAATAAATGTCCATTCAGAAGCAGTGATAGGGCATCACTTATTGCTCATCTACAGCAACATCAACCATCGGATGAATCTATATTCAAATGTTATTTCTGTCCATACTTCGTAAAAGATGAACAGGACTTAGTACAACATTTACTCGTACATGGTGTAACTGAACCTGAAGATTATATAACGAAGGCTATGGGGAGTAAATCTCCATTACGAGACCAACAAGTACTTTCGGCAATATGTGCAGCTAAGCGTCATAAGTGTACTGAATGTCCATACGAAACGAACAGCAAATCCCAATACATGTACCATGAACAATTTCATCGTACTACAGTAGATACCCCTTACAAATGTCCAGAATGCAACTACAGCGTATCAAAGAGACATCTACTACATCAACATTTAAGAGTTCATGGAATAGTGACAAAAAGGCTTGACCTTGAATACGGAACAGATCAACCATCATTTTCAAATAAAGACGACATTCAAACTGATTATCAATCATACTTGGAAGAAATTCCATATGTCTGGGTTTCTGCAAAGAATGAGTTTCATAAAATGTACAAGTGTCGATATTGTTCATATGTGAACTCTCAAAAATGTAAAATACCAAATCATGAAAAGATACATTGCATTATTTTCGAAAATAATGATACAACACTGTATAAATGTTTAGAATGTAAATTCACATGTGACAACGCTGGTAGATTAGCGGAACATTCTAAATCACACGCTGAAATATACGGCCGTATCTATTGCCCCGTCGAAGATGATATTCCAGATGAGGAACAGATAGCGAAACTGAGAAAAGTTCttgaaatagaaaaaataagTAACGCAGAAAACTCTTCTCAAGAAATAGGCACTGAAGGCAAggagattatattattatatttttgtcacAAGTGTCCAGCTAGATTTTTAGGAGTTAATGATTTACAGAATCATAACAAACTTCATGACTCTTCATTTTTGTACAAATGTAAATACTGCGAATTTTCAGTGCCTGAAGAACGTGAATTGGCTGCGCATGCTACCGTACATACAGATGAATATAACACGAAAACAAAAATGCTTAAATTCATGCATAATTCCCATCCTTCTCATAGACAACCACGATTAGAATTTATACAAAATCCAAACAATTTGGAAACAACCTGGATAGTTATAGAAGGTCCTAGTATTGTTGGAAACATTGAGAAtagtaacaaaaaacccaatGAATCAAAGCATGTGCCAAAACAATATTTCTGCAAACTGTGTCCAGCtaagttttttaaaagttcagcTCTAAGTTATCACATGGGACTGCACGGTGGAGACGGTGAACATAAATGCAAGAAATGCAGTTATGCCGTGAAGAATGTAGGGAACTTAGCCAAGCACGAATCATTACACGAACATGAAAATAAATCTGCAAATTGTGATTATGAATCTGGTGAAGACATGGATTATAAGAATATTCCATTATCAGGTACTGACCTGTTCCAAAGAAAGACAGAGGCACAGAAACGGGTGTTAATTGATAAAGATAAGTTAGTGAAGCCCAACGATCATTTTCCACCTGTATTACAAGCTGATCCACAATTCGGTTATTTAATGCATGGTAATCCTGAATTTATATACCCAACTTACTTAAAAAATGGACGTCAAAAAGAAAAGCGCTACAAATGCCATAAATGCCCTTCAGCATTTGAGAAACGTGAACAATATAAAATTCATTTATCATTGCATGGTTCCAAGCAAAGGTATAAATGTGAACTGTGTGATTACTCCGTAAAATATTACGCTAACTACGTCCAGCATATGAGGAAACATCAAATGAATGATGAAGCACAAGCAGAAAGGAAAAAGGATAATGGCTTTGTTGTATCTGAATCTCAAGATGAAGTGAAACAAGAACAttgtaatgataatattaaacTTGCGATTAAAACTATGCCCAAAGGACCCGTAAAAAGCGATTTTCAACAATTCTCAATCAGTGATCAACAAACTCTCAGACTTTTACAACGGAGAAGATCAATGAGTAATTGTGGTAAAGATGCTAATACGTCTGAAATCTCACCAGTAAAGGAACGGAAACTGCATATGTGTTTATTATGTCCCTACACAAATCAACGTCAGGATTCTTTAACTAACCATTACAAGAGACATGGTGACGCCGATGTTCTCTCTGGAGGAAGTCATAAATGTTCTTATTGTGATTTAGTAGTTGTACAATCACATTTCCTTCGCGAACATTTAAAGACACATTTTAATTATCACAAAAACCTGACGGCGGAATGTTTTGCAGCGAATGATGACGTTAGTTTTATTCTTACTAAATTGGAAGATGAAGGCAATGAATCGGTTGATCTCAAATTAGAAATTCAAAACAAGAATTTCATATCTAAGGacaaaatatttgttaaaattaaaactGGAGAACTCTCAGTAGAATAA
- Protein Sequence
- MLQQNMSSPPSAQHGEVTSTFGRYREGRLCGDVSSEGSSDAAEDAELPQCKIKRNYNCTKCTFHTQNPRAYLVHTRDAHFVKLKIFDCPQCIYAAKYQHKLTRHIKMVHEGQEAEKKNSKPSSSVKMDSELSMSMSYEAPTESMRIEDLVEEVDESEDMMMEIEEGPDYAIEHGDDIDVLGENISEQAAPSNLSKTKGNVKFFTCDKCTYVTHIRTRFTKHVKYHSTPMIKCTMCDFRTPYKWNLDRHMKNHGGTGSFRCSMCNFTADIKQSLTVHEINHHTPPLGQLLSSRRRNRVGASDTVTAECDTANASLPREEEGSGDSQSSHSVSDMGLQYAERDALSCKSDSNDGTHSDVAHKKDSLGSPNHSSDESKQKQSRKVPRPIPQLIPLNTSTPNQKPTGNGEPPLKKFKESSPVDLTDSNSGSKIDNLPIDITLMPVNSNGSKETIVRKKNESFFDRLKERLLTETGEEGSLRCKNCGFESKCLSEHSVHENNCTPQSNRINPNSSLSSLSSTRCQNCRHRCKSSADLYIHMQTCGKNEKAKSKNTVENRNHSNNTSTPNQDKEIERHPMENVVFVWNNIDQDTNKFDVPLDININDDSTLPSLNKNFDIELVDENETMNLSPSQAVGRKVFKCPHCPFFSTTASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSARDPEHNEAKVLMTDETGRRNYSKYNKFLAMPVLNEYGENEFHYLESNPSVEGTMEVEDSLNDVSELMHTQYEMQPLNLHTQQMGDQYDFLDNRGLNINDLKKPKKTLWKCKRCNYRDPSKEALLEHVREHAKDGGQEELHKAGAAKKTENGPDPADLAYRCGHCHQLSNWKHVIQRHCRLKHEGIIKVITTVKPKPEPLNINELNDTCNKCPFRSSDRASLIAHLQQHQPSDESIFKCYFCPYFVKDEQDLVQHLLVHGVTEPEDYITKAMGSKSPLRDQQVLSAICAAKRHKCTECPYETNSKSQYMYHEQFHRTTVDTPYKCPECNYSVSKRHLLHQHLRVHGIVTKRLDLEYGTDQPSFSNKDDIQTDYQSYLEEIPYVWVSAKNEFHKMYKCRYCSYVNSQKCKIPNHEKIHCIIFENNDTTLYKCLECKFTCDNAGRLAEHSKSHAEIYGRIYCPVEDDIPDEEQIAKLRKVLEIEKISNAENSSQEIGTEGKEIILLYFCHKCPARFLGVNDLQNHNKLHDSSFLYKCKYCEFSVPEERELAAHATVHTDEYNTKTKMLKFMHNSHPSHRQPRLEFIQNPNNLETTWIVIEGPSIVGNIENSNKKPNESKHVPKQYFCKLCPAKFFKSSALSYHMGLHGGDGEHKCKKCSYAVKNVGNLAKHESLHEHENKSANCDYESGEDMDYKNIPLSGTDLFQRKTEAQKRVLIDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEAQAERKKDNGFVVSESQDEVKQEHCNDNIKLAIKTMPKGPVKSDFQQFSISDQQTLRLLQRRRSMSNCGKDANTSEISPVKERKLHMCLLCPYTNQRQDSLTNHYKRHGDADVLSGGSHKCSYCDLVVVQSHFLREHLKTHFNYHKNLTAECFAANDDVSFILTKLEDEGNESVDLKLEIQNKNFISKDKIFVKIKTGELSVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00889702; iTF_00933179;
- 90% Identity
- iTF_00933179;
- 80% Identity
- -