Basic Information

Insect: Lymantria dispar
Gene Symbol: salm
Assembly: GCA_032191425.1
Location: CM063446.1:17562703-17565947[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.23 28 6.8 1.9 1 21 32 52 32 53 0.94

2 5 3.2e-06 0.00039 22.1 0.9 1 23 353 375 353 375 0.98

3 5 6.4e-06 0.00077 21.2 2.1 1 23 381 403 381 403 0.98

4 5 0.0048 0.57 12.1 2.2 2 23 658 679 657 679 0.97

5 5 0.29 34 6.5 3.8 1 14 685 698 685 700 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.23	28	6.8	1.9	1	21	32	52	32	53	0.94
2	5	3.2e-06	0.00039	22.1	0.9	1	23	353	375	353	375	0.98
3	5	6.4e-06	0.00077	21.2	2.1	1	23	381	403	381	403	0.98
4	5	0.0048	0.57	12.1	2.2	2	23	658	679	657	679	0.97
5	5	0.29	34	6.5	3.8	1	14	685	698	685	700	0.90

Sequence Information

Coding Sequence: ATGAGGTCCCTTTTTGTTCTAGGTGAAAGTTCGGGATCGTGTTCAGAAGACGAGATAAACAATGTTGATGAATCGAGAGACCGTCCTGAAGCGCACATGTGCCCACGCTGTCAGGAACAGTTCGAGAACCTTCATGAGTTCCTATACCACAAACGACTATGCGATGAGAAAGCATTACAAATGGGCGAGGAGAGAATGCACTCTGATCCAGAGGAAATGGTTGTCTCAGGCGACGAAGAAATGGATGGACCTAACAAACGATTAGAGCAAGTGCGACGGCATCGACAAgatgcagaaaataataatagccTCGAAGACGGTGAGGCAGAAGTGCCTGAAGCCGATGTACCACCGGTCGGTCTACCCTTCCCTGTGGCTGGCCATGTCACACTTGAAGCTTTACAAAATACTAAAGTTGCTGTAGCTCAATTTGCTGCAACTACAATGGCGAATAACGCAGATAATGAAGCGGCGTTACATGAACTAGCTGTTTTACAAAGTACGCTATTCACGCTACAACATCAACAAGTGTTTCAGCTACAATTAATACGCCAATTACAAAACCAATTATCATTAACGCGACGGAAAGACGATCCTATTCAGAGCCCACCGCCCAGCGAACCAGAGCCAAATCTGCCAGCGCCTCCCGTTCGATCGCCGTCGCCGCCTCGTCCGCCACGGGAGCCAACTCCTGTTGTACCCACTCCTCCCACTAGTCAAAATTTGCCGTCAACCCATACACATCTAATACCTAAGACGGAACCAATTTCCGTTCCTAAAATTCCAACCTCATCTCCACCGCTGATGACCCATCCACTTTATAGTTCCATTTCCTCATCGTTAGCTTCTACAATTATTACAAACAACGACCCACCACCATCTCTTAATGAACCAAATACACTAGAAATGCTTCAAAAACGAGCACAAGAAGTATTAGACAACGCGTCACAAGGCTTATTAGCTAATAATCTTGCCGATGAACTCGCCTTCCGAAAATCTGGGAAAATGTCACCATATGACGGTAAATCTGGAGGAAGAAACGAGCCATTTTTCAAGCATCGCTGCCGATACTGTGGGAAAGTGTTTGGAAGTGATTCTGCGCTACAAATCCACATTAGATCTCATACAGGTGAAAGACCATTTAAATGTAATGTATGTGGATCACGTTTTACAACCAAAGGGAATCTAAAAGTGCATTTCCAAAGACATACAGCAAAGTTTCCGCATGTCAAGATGAATCCCAATCCAGTACCAGAACACTTGGATAAATACCATCCGCCACTATTAGCGCAGTTGTCGCCGGGACCGATTCCTGGCATGCCACCACATCCACTTCAATTCCCTCCGGGTGCGCCAGCTCCCTTTCCGCCAAGCTTGCCGTTGTACAGACCCTCACACCACGATATATTACCACCTCGGCCACTCGGAGATAAACCTCTACCGCCTCATCCATTATTTACAATGAGAGAAGAACAAGACGCTCCGGCTGATCTCAGTAAACCATCTGTGCCGAGCCCTTGTCAATCAGGCCCAGAGGTTAAGTCAGAACCTCAAGACGAGGAAAGTCAACGAGATTCCAGTTTCGAAGATGTTGATCGAGTTTCCCCCAAACGAGAACCAGAAGAAAACGATATCACCCCAGATCCAGAACAAGACAGATATCCCTCTACGTCACCCTACGATGACAGCATGGATTCTAAATATAGTAATGAAGATCAAATCGGCAGAGAAAGTCCCCATATGAAGCCCGATCCAGATCAACCGGAAAATCTTTCAAGTTCAGAGAGCGGGCGGAGCGCGCGGGCCTCGCCACCATCGCCGACAATGTCGACGCTGTCGACGCCGCCGAGGCTGCCGCTGCAGTCGCCGCTGCCGTCGCCACCCGCGCCTATCGCCGCGTTGGGAGCTCTCGGAGGATCACCCTTCAGCCCGCTCGGACTCGCGTTCCCTCCCGCAGTGCGGGGCAACACTACCTGTAACCTCTGCTACAAGACGTTCGCCTGTAACTCGGCATTGGAGATACATTACCGCAGCCACACCAAAGAGCGACCGTTTAAATGCACCGTCTGCGATCGCGGCTTCTCTACAAAGGTATGTTTCTAA
Protein Sequence: MRSLFVLGESSGSCSEDEINNVDESRDRPEAHMCPRCQEQFENLHEFLYHKRLCDEKALQMGEERMHSDPEEMVVSGDEEMDGPNKRLEQVRRHRQDAENNNSLEDGEAEVPEADVPPVGLPFPVAGHVTLEALQNTKVAVAQFAATTMANNADNEAALHELAVLQSTLFTLQHQQVFQLQLIRQLQNQLSLTRRKDDPIQSPPPSEPEPNLPAPPVRSPSPPRPPREPTPVVPTPPTSQNLPSTHTHLIPKTEPISVPKIPTSSPPLMTHPLYSSISSSLASTIITNNDPPPSLNEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRKSGKMSPYDGKSGGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHVKMNPNPVPEHLDKYHPPLLAQLSPGPIPGMPPHPLQFPPGAPAPFPPSLPLYRPSHHDILPPRPLGDKPLPPHPLFTMREEQDAPADLSKPSVPSPCQSGPEVKSEPQDEESQRDSSFEDVDRVSPKREPEENDITPDPEQDRYPSTSPYDDSMDSKYSNEDQIGRESPHMKPDPDQPENLSSSESGRSARASPPSPTMSTLSTPPRLPLQSPLPSPPAPIAALGALGGSPFSPLGLAFPPAVRGNTTCNLCYKTFACNSALEIHYRSHTKERPFKCTVCDRGFSTKVCF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00943292;
90% Identity: iTF_00824289;
80% Identity: -