Ldis038897.1
Basic Information
- Insect
- Lymantria dispar
- Gene Symbol
- -
- Assembly
- GCA_032191425.1
- Location
- CM063467.1:6587189-6600364[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.085 10 8.2 1.1 1 23 251 273 251 273 0.98 2 9 0.019 2.3 10.2 0.2 1 23 280 302 280 302 0.95 3 9 0.00073 0.088 14.7 2.3 2 23 336 358 336 358 0.97 4 9 1.7e-05 0.0021 19.8 1.1 1 23 367 389 367 389 0.98 5 9 4.2e-05 0.0051 18.6 1.2 1 23 394 416 394 416 0.98 6 9 0.016 2 10.4 1.0 1 21 424 444 424 449 0.93 7 9 0.00055 0.065 15.1 0.7 1 23 454 477 454 477 0.96 8 9 0.00057 0.068 15.0 1.7 1 23 483 505 483 505 0.96 9 9 6.7e-06 0.0008 21.1 1.1 2 21 516 535 516 536 0.95
Sequence Information
- Coding Sequence
- ATGCTTTTTAATCAGatttttttgatattacagctttgtccCGATTCCCATCTTTGCTATATTTGTTGTCATATGGTGAACAAATTGTGGCTTTTTAAATCTGTATGCTTGAAACGTAGCCTCGAATACCCTGTACTGTTTAGtgaAAAATGCACTGTAACTCTGAACAGGAGTGACATAGATAATCTCATATTATGCCCGGAAGAAAACTGTTTATCAAACCATGCTGCTCAAATTTATTTACGATGTAATGACAACGGAAACCAAAGCAACGATTATGTCCAATTACCAGATGAATGCAACAATTTCGACGATTATATAACAGAGAAAAcaaaaaattgtgtttttagtGTTGGATTTTATTCAGGCGGTGATAACTTAGATGCTATTTTAACGGAAACGGTTAATAATGAAACAACGATAACGGGATTTGAGAATAACTTAGATAGTGTTCACGATACTTTGATTAATAACGATTATATTTATAACGATGATATTAATTTTGAGGTTAATAAAACCGTTGAAGGTaatgttgaaataaaaattgaacAAAATAATGATGTAACTATGAATTATGTTGATAACGATGATATTGGAGATGCAAAATTTGATGAATTAGATACATTTGATGACAGTAACAATTTAATTAAGAATGAAGAGTATTCGTTCATCAAAACTCTTCTCAGTGTAGAAGAGCAGAAAGCAGAATTAGAAGCTCATAGAAAGAGCAAGAGTTACTTGGGCGCAGAGTTTAAATGCTACAATTGTGCTTTGGGATTCCTCTTTAAGGATTCTTATCAAGCTCATATGATGAGACATGAAGAGtcgAATGGTGAATTCGTATGCGAGTTGTGCACCTTACGTTTCGCTAGTGCCAGGGTCCTTAGAGCTCATAACACTTCCCATTGTGAGCGGTACGCATGCGCTCGCTGCGGTGTCGCCGTTCGATTGAGACAGCGGGACACACATGCGAGGAGTTGCCACGAGCGACCACCGGGCGGCGCCACTTGCCACCTATGCGGAAATGTCTTCCAGGACTCGAAAGGACTTCAGCAGCACCTTAAACGTTTCCACATGAGTAAAACCAGTAATCGAACCTATTCCTGCAACGTTTGCGGCAAGAGTTATCACAATCAAGCTGCTGTGAGAACGCATATGATTAAACATATACAAAGAAAATTCCCTTGCGACCAATGTTCAGCGACATTCAGCAGTCCGTATACCCTCACACAGCACAAAAAGAAACATACAGATACGAATCGTGGGGAACATATGTGTGTTACTTGTGGGGTCGGATACGCTTCTAGGAAATGTCTTTTGGCCCACATGAGGAATGCGATGAGACATCAGGAGAAAATgTACGACTGTCCAATATGCAGTCGCGTTTGCCCAAACCAAAGATCTCTATCGCTGCATCTAACCCGAGTACACTCGACTAGTAAAGATCATGCCTGTCCtcaatgtaataataaatatacgagTCGGCAATCATTAGTACGACATATAAAGGAGCATACCACACCGAGGGCGAAGATCAAATTGGCACAATGCGATAGTTGTGGAAAAAGTTTCAAGAGCAACAGTAAATTGAACAGACATCTCAAAGACGTATGTCAAAAAGACAAATTAGAAGAAGAATTATCGGCGTATGAAGAACAACAAAACGTAATGTTgtaa
- Protein Sequence
- MLFNQIFLILQLCPDSHLCYICCHMVNKLWLFKSVCLKRSLEYPVLFSEKCTVTLNRSDIDNLILCPEENCLSNHAAQIYLRCNDNGNQSNDYVQLPDECNNFDDYITEKTKNCVFSVGFYSGGDNLDAILTETVNNETTITGFENNLDSVHDTLINNDYIYNDDINFEVNKTVEGNVEIKIEQNNDVTMNYVDNDDIGDAKFDELDTFDDSNNLIKNEEYSFIKTLLSVEEQKAELEAHRKSKSYLGAEFKCYNCALGFLFKDSYQAHMMRHEESNGEFVCELCTLRFASARVLRAHNTSHCERYACARCGVAVRLRQRDTHARSCHERPPGGATCHLCGNVFQDSKGLQQHLKRFHMSKTSNRTYSCNVCGKSYHNQAAVRTHMIKHIQRKFPCDQCSATFSSPYTLTQHKKKHTDTNRGEHMCVTCGVGYASRKCLLAHMRNAMRHQEKMYDCPICSRVCPNQRSLSLHLTRVHSTSKDHACPQCNNKYTSRQSLVRHIKEHTTPRAKIKLAQCDSCGKSFKSNSKLNRHLKDVCQKDKLEEELSAYEEQQNVML
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00933026;
- 90% Identity
- iTF_00933026;
- 80% Identity
- -