Ldis041677.1
Basic Information
- Insect
- Lymantria dispar
- Gene Symbol
- -
- Assembly
- GCA_032191425.1
- Location
- CM063469.1:12123459-12184365[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0085 1 11.3 0.0 1 23 517 540 517 540 0.95 2 15 0.046 5.5 9.0 3.8 2 23 740 761 739 761 0.95 3 15 2.1 2.5e+02 3.8 1.4 1 23 773 797 773 797 0.89 4 15 0.0021 0.25 13.2 0.6 2 23 804 827 803 827 0.97 5 15 0.097 12 8.0 0.4 1 23 833 855 833 855 0.93 6 15 0.0044 0.53 12.2 2.9 1 23 861 883 861 883 0.98 7 15 0.66 79 5.4 0.0 2 19 894 911 894 914 0.89 8 15 0.094 11 8.0 0.2 1 23 993 1015 993 1015 0.97 9 15 2.7 3.2e+02 3.5 7.2 1 23 1022 1044 1022 1044 0.95 10 15 0.0018 0.21 13.5 1.8 1 23 1084 1107 1084 1107 0.95 11 15 0.0058 0.7 11.9 1.3 1 23 1114 1137 1114 1137 0.97 12 15 0.00071 0.084 14.7 1.7 2 22 1167 1187 1166 1187 0.96 13 15 0.00022 0.026 16.3 1.9 1 23 1194 1216 1194 1216 0.98 14 15 0.00016 0.019 16.8 0.1 1 23 1222 1244 1222 1244 0.97 15 15 0.0005 0.06 15.2 0.7 3 23 1252 1273 1250 1273 0.95
Sequence Information
- Coding Sequence
- ATGATGACAGATTCACAGCCACCATTAGTTATGTGTATGGAGAATATCATCGGTGAAGATGTCCTACTCAAGATAGAGCCCAATGACAATTTTGAAATGTTTCTTAATAAAGCCAAGTCATTATTAGGTTTCGACATAGATATAAACTCCATAACAAGAAATCAACCGGTATCTCTGACTGAAAACGTCTACCAGTTCCTTATAAACGCAGAACAAAATATCCATAATGATGATTTATCTCAAACGTTTGATCCAATGTTAGAGAGCAATGATGCGGCCAGTGATTTGGTCTATATTTTAGACGATGGCACTCAAATCCGAGCATCTCAAATACAATTCGATAATGATGATCCTTTAATTGATTTAACAGCAGAGAAAATACCTTTCATTAAGTACGCTGATGGCTCTGATGATATAGATATAGACAGTATTACTGTAGAggaaactaaaaatattaacatagtTGATAGTCCTGTTTCAAAATGGCCTAGTAAGAGTGCCAGTCCAAAATGTAGCTTCGTTAATTCATTACCATTTAAACTAGTCTCCAATAATACTTCAGCCTTTGAAGCCCAATTTACTAAATATTTGGCATCTAATACAAGTAAAATTTATGCTACATTGAATACTGTTACTAATCGAAATAAATCTCCAAAGACTTTAATTAAAGATAACTTTAAGAATTATGACGGGTATCAACGGAATGATAATTTGTCGTACACTAGAGAAGATATACTGAATATGTTTAAGGATTCTCCTATGACATCACTGCCTTATGATCAAGGTTACAGCGAAAGAAGACATATTAGAAAAACAGATCCTTCAAGACTTGTCCATAAAAACTGGACTAAATCAACAACTTATGTTAATATAGATGGTATGTTAATCGGCGGCAATGAGAGCCAGATTTGTTTTATATGCGGCAAAAATGTTGATAATAATGTGGATAAACTTTATCTGTTTGATAATGAAGATCAAAGGCTTCACAGATGTTCACCACAAAAGAAATCTTCaacaaaacttaaaattatatgcGAATGTTGTCTGAACGATCATTTCAGACCTTGTCGATTGAAAAGTGCTAATCAATTTCTAAATCCTGATGAGTATTTGGTGATAAGAAATAATCAACAGTATATATTTCAGAAAATTAAGAATTTCAGTTTTACTCTTTTCGATAAAGTAAAAGAACCTAAAGAAGTAAGAGAAGAACTTGTTAATGTGGAAATTGGTTCTGATGGTGAAATTATAACCAAACCGATTGACAATGATACAGGATCGGATGATGTGATCATTGTTAAAGATGATAAAAAGGATAGTTGTTCTAGTGATGTTGAGATTATCGAGCCTGAACCGGAGATAGATCAGATTATAGACAATTTAGAGGAAGCAGACGAGGAAGTGAAAGAGTTCTTAGGAAAGTATTCATGTGATAATAAAGAAGTTACTGAACTGAAATGcagattTTGTGAGAAAATATTCATGAATGTTACCGATGTGTTGGAACATTGTGAGTCACATAAGCATGACTTGGATGATGAGCATGTATTCCCTTGTCCACTATGTAATTACGgATACGCAAATTTAAAATGGCTGAAGGGTCATTTAAAGGCAGCTCACGAAACCATCAAAACCAAAACCGATGACAGTGAACAATTGAAAGAGGAAATCAAATCTGAAATCTCGAAGAAGTCTCCAAGTAATTCGCCACCTATAGCTGCTAGGACGCGAAGTTCCAATAAAAAGATAGATGAAGAAAAGAAAGataATGAAAATGAAGATAAAAAGAATGATTCGAATGTGTCTATGgaGACCCAAAAGCCAATCATAAAAACTGAAGTAAAACAAGAAGCCGTGGACAGTAGCGAGGATGAGATCTGGATCGTGCAGACAGGTGACGTGGAAGACTCTCAAGAATTGAAGAAACTGCTCGGCGCTGCCAAGAGTACAGAAGAGACTGTAAATACGAAATcagataaattatttaaatgcatAAATTGCAGTGGAATATTCCCCACCGCTGGTAGCCTTTCCTCCCATGGATGCAAACGTAGAGGCAGGAAGCGTAAGGTGAAAGAAGATAACGtaatttgtgtaccaactgagGCAGATTTTTTGAAGAGAGCTCAAGGACGTCCCCGGAGTGACCTTGCGGGAGGCAATGATCTGCGTACCAGAAAACGTCGCAACAAATCAACGTGGAATGAACAAATTGTTACGTGCCATAATTGTAATGAGTCATTTACATCGAAAGTACGACTTAAATTTCATATGCAGTTCCATGAGACGCAGAACTTGATGACGCCAGAGGGACTATACTCCTGCTCTGAATGTACTGAAACCACTTTCCCAACGGAGACGGAGCTGTTTGATCACGTCCACTTTCAGCATGACAAGCAGAAAAGGTGGCAGTGTCCTGTCGAAGGATGTCGGAAGACTTTTTTCTTGAGGGCAACATTAACTAAACACAGTCGCACGCACACAGACACACGTCGCTATGTCTGTGTGACTTGCGGTAAACGGTTTTTGGATAAACAGACATTGGATGAACACAGTGTTACACATTTACAGATAAAACCATTCCAATGCCACATCTGCTTGAAGCAGCTGACCCGTCGTTCTCGCTTACGTATGCATGTACGGGCGCATGAAGAGGAACTGTCACCACGTCTCGTGAGGGTCTGCGCTGTATGTAAACGTGCATTCCGGGACCTGGAACAAGCTCAGGAGCATGCAACGAAATCCAATGAGTGTATAGAAGCTTATGCCAGTGAACTGAAGGTTGAAGATGATGAGGTGTCAGTACAATTATCACCAACTAGTGGCATTGTTAAGCATACTGTTCAGATTACTGAGTCTCCAAAATTATCGAAGCCAGTTAAACGGGAAGTCTCCATCGAAGTGGGGGAACCTTTACTGTCACAGTTGACTGATGAGGCGAAGACTCTTATTCGTGTGGTGGAGATTGAAAAGGCGTTCAGATGCGAATACTGCGAGGATGTTTTCTATCTGGAGGATGGTCTGAACAGTCATCGCTCTATCCACAAAGGTGTGAAGAATCCATTTACTTGTCATATTTGTAAAGTAAGCTTCGCTACATATTCTAGATGTACAACACACAAGACGACCCATGGTTTTTACAAGCGTTCTCTCGCCGATGCGAAGAAACAAGGTGATGGTACATTGAAGGTCACAAGTCTCTCAGCCACTGGTATACTTGGTTATGGGGATTTTCCTGTCGTCAAACATTTCTTGTGCGAGGACTGTGGACGTTCGTATCTACATTGGACATATTTGCAAGTCCATCGACGCATGAAACATGCAAATCAGAACTACTTGTACAAATGCAATCAGTGTGAACTTACTTTTCCTAACAGTTGGAGTATGTCGTATCATAAAAAGAAGGCACATGATAAAACGAATCCTGATGACCCTGGTATTAATAAGAAGAACTTAAGGGATGATTACAGaCAGGTGCATAACCAAGATCCTGATGTGACCTGCTCATCATGTAATAAATCGTTCTCATCTCACTCGGAGTACAGTACGCATTTGCGTACGGAATGTACACGGCGACCTCACACCTGTCCGGTATGCGGACACGCGTTCCGTACCCTATCCATGCGTAATGAACACCTTCGTGTCCATACTGGGGAACGTCCCTTCCCCTGTGATGTTTGTGGAGTCGCATTTAGAAGGTCGACAGCTATGCGTAATCATCGCCTGATACATAGCGGAGTTAGGGCTTGGGCGTGTGGACGGTGCCCTAAACGCTTCCGTATCCGATCCGATCTCCGCACGCATCTAAGACTTAAACATCCAGCTACACTCCTCGTCTTTGAGTGCCATGCTTTACAGATGGAAGGTTTGAATCCATCGCTGGAAGATGTAATGAACCACCTCGCTATACACAACGTGTCCAGAAATAAAGTCGTTGAAATCACAAAGATATCTTTCGCTAAGGGCACGTCAAACATAGTACCAGACAGTGCCCGGGCACTATCAGCTCTGGAGAATGTACCGCGCGGCCAGATTGTCTGCAGAAATACTACAGCCTCCTCAACATTTGCTGAATTTCAACCAGCGCGTCGTGGTAGAGGCATTGCGAAGAATCCCAGACGTCCAAAGATATTGCAACGCGGTTTTAATACTGAAGACTCTTCTGTTTACACTCATAGCGTTAACGGCGAGGATCTCTCGGAGATGAATCTTCAAATGTTTTTAAGAGACGGTGTCTTGGCAAATGATAATCAGATGGTACAACTTCAATTGGACGATGTCCACGTCTAA
- Protein Sequence
- MMTDSQPPLVMCMENIIGEDVLLKIEPNDNFEMFLNKAKSLLGFDIDINSITRNQPVSLTENVYQFLINAEQNIHNDDLSQTFDPMLESNDAASDLVYILDDGTQIRASQIQFDNDDPLIDLTAEKIPFIKYADGSDDIDIDSITVEETKNINIVDSPVSKWPSKSASPKCSFVNSLPFKLVSNNTSAFEAQFTKYLASNTSKIYATLNTVTNRNKSPKTLIKDNFKNYDGYQRNDNLSYTREDILNMFKDSPMTSLPYDQGYSERRHIRKTDPSRLVHKNWTKSTTYVNIDGMLIGGNESQICFICGKNVDNNVDKLYLFDNEDQRLHRCSPQKKSSTKLKIICECCLNDHFRPCRLKSANQFLNPDEYLVIRNNQQYIFQKIKNFSFTLFDKVKEPKEVREELVNVEIGSDGEIITKPIDNDTGSDDVIIVKDDKKDSCSSDVEIIEPEPEIDQIIDNLEEADEEVKEFLGKYSCDNKEVTELKCRFCEKIFMNVTDVLEHCESHKHDLDDEHVFPCPLCNYGYANLKWLKGHLKAAHETIKTKTDDSEQLKEEIKSEISKKSPSNSPPIAARTRSSNKKIDEEKKDNENEDKKNDSNVSMETQKPIIKTEVKQEAVDSSEDEIWIVQTGDVEDSQELKKLLGAAKSTEETVNTKSDKLFKCINCSGIFPTAGSLSSHGCKRRGRKRKVKEDNVICVPTEADFLKRAQGRPRSDLAGGNDLRTRKRRNKSTWNEQIVTCHNCNESFTSKVRLKFHMQFHETQNLMTPEGLYSCSECTETTFPTETELFDHVHFQHDKQKRWQCPVEGCRKTFFLRATLTKHSRTHTDTRRYVCVTCGKRFLDKQTLDEHSVTHLQIKPFQCHICLKQLTRRSRLRMHVRAHEEELSPRLVRVCAVCKRAFRDLEQAQEHATKSNECIEAYASELKVEDDEVSVQLSPTSGIVKHTVQITESPKLSKPVKREVSIEVGEPLLSQLTDEAKTLIRVVEIEKAFRCEYCEDVFYLEDGLNSHRSIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRSLADAKKQGDGTLKVTSLSATGILGYGDFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANQNYLYKCNQCELTFPNSWSMSYHKKKAHDKTNPDDPGINKKNLRDDYRQVHNQDPDVTCSSCNKSFSSHSEYSTHLRTECTRRPHTCPVCGHAFRTLSMRNEHLRVHTGERPFPCDVCGVAFRRSTAMRNHRLIHSGVRAWACGRCPKRFRIRSDLRTHLRLKHPATLLVFECHALQMEGLNPSLEDVMNHLAIHNVSRNKVVEITKISFAKGTSNIVPDSARALSALENVPRGQIVCRNTTASSTFAEFQPARRGRGIAKNPRRPKILQRGFNTEDSSVYTHSVNGEDLSEMNLQMFLRDGVLANDNQMVQLQLDDVHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00932971;
- 90% Identity
- -
- 80% Identity
- -