Ldis040741.1
Basic Information
- Insect
- Lymantria dispar
- Gene Symbol
- -
- Assembly
- GCA_032191425.1
- Location
- CM063468.1:15012893-15020990[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.076 9 8.3 6.9 1 23 146 169 146 169 0.95 2 18 0.00012 0.015 17.1 1.1 1 23 178 201 178 201 0.96 3 18 0.016 1.9 10.5 0.4 2 23 214 236 214 236 0.97 4 18 0.00032 0.038 15.8 0.6 1 23 245 268 245 268 0.97 5 18 0.0062 0.74 11.8 2.1 1 23 280 303 280 303 0.96 6 18 0.00015 0.017 16.9 0.7 2 23 330 352 329 352 0.97 7 18 0.001 0.12 14.2 1.6 2 23 362 384 361 384 0.96 8 18 0.11 13 7.9 1.8 3 20 390 407 388 409 0.91 9 18 0.00098 0.12 14.3 0.5 2 21 414 433 413 436 0.94 10 18 0.18 22 7.1 1.3 3 23 446 467 444 467 0.92 11 18 0.0025 0.3 13.0 3.5 1 23 472 495 472 495 0.93 12 18 0.021 2.5 10.1 3.2 1 23 506 529 506 529 0.96 13 18 1.4 1.7e+02 4.3 2.0 1 23 553 576 553 576 0.93 14 18 1.4 1.7e+02 4.3 0.1 2 23 583 604 582 604 0.86 15 18 0.013 1.5 10.8 3.0 1 23 609 631 609 631 0.98 16 18 2.7 3.2e+02 3.5 1.1 3 23 639 661 637 661 0.88 17 18 0.011 1.3 11.0 0.2 1 23 697 719 697 719 0.97 18 18 0.097 12 8.0 2.0 1 23 725 748 725 748 0.97
Sequence Information
- Coding Sequence
- AtggaagaaaaagaaataaaagtggAGATTAAACTTGAAAGGCAAGATCCTACATCGTTTTTACCGGATGAGCCtatgtcttatgaaattaaaaagaagaaaaaaaagaaaaagaagcaCCTGCAAGAAGATCCATTTAAAGATATTGATGATGTCAAGACTACAATTATAGAAATAATGCCAGCCAGTTTAGATCCTGAAGTCAATATTAAAGTTGAGAATATAGAAGTTGAGCTGGATTTCAATGATTTCACCGATAACACGGGCCTCATGCTAGAATCCCATCATAGTGATGACAGTCAAGAGCCAGCTGTGAAAATTGAAAATCAGAATCACGAGGCAGTAATTCTCACATTTGAAAGCGTTATCAATAACAAACCAATAATGCCACAAGAAACAGAAGAAGAAgatttaaatattgatataaaacccAGACACTTTTGCAAACTATGCCATCTCGTCTTCCAATCAACTAAAACTCTAAGAGTACATCAGAAGAGAAAACATAAAATCTTCAGAAAGTCTTTCAAACATATCTGTGATTACTGTGGTATGTCTTATGAAATGAAGAACAGTTTAGCTGCACATATGAAGCGAAAACATGGACCGAATTCAATACCGGATGATAGAGAAGAGAGAACTTGTGAAATATGTGCTCTAGTATTTAAAGGCATGGCCAGATTACGGATGCATATGAGAAGAAAACATGGCTCGTTTCAGGATTCATTCAAGTACGAATGTAAAGATTGCGGTTTAACTTATGATAAATACAGAAGTTTAATAGTTCACGTCCAACGTAAACATACAAACGATAGAAAACCTGAAATTGGACAGTTGTACAATTGTCTATTTTGCTCAAAGATGTTTGCTAAAAGAGAAACTTATGCGAGGCACGTGCAACGAAAACATCAAGTTGATGAGGATAATATAAAACAAGAAAAAGATATGGATTTAGAGAATTGTAAGAACGACAAAACCGGAGAGATTACTTGTAAAGAATGCCCTCTAGTCTTTTCATCggtgaattttttaaaattacacaTGCGAAGGAAGCATAATGCTTTGAGAGAGGACTTTAGATTAAAATGTAGAATTTGTAATTTATCCTACAATAAGATTGAGAGTCTTAAGCGTCATGTAAGAAGAAAGCATGACAAAAGTTCACACTGTGAAGTCTGTAATAAACAATTCGATACAAGAGAAATGTATCTTAATCATTCACATACAAAAGTTATAAAAGAATGCTCAATTTGCGGTCTCATATTTGCATCACAAGGTGGTTTAGCTAAACATTTAAGATGTACACATAAAATAGATACACCTAAGACTATATTTTGCAGTATATGCCAAGAAGGTTTCCATGATAAACGTCAATTAAAACCACATTTCATGAAAGTGCATTTAAAAGCATCTTATACTtgtagatattgtaaaaaaatatttaaagcgaAGGAGAGTTATCGACGTCATGTTTTATTTAAGCATCCCACAGCGGAGCATGTGAATTCTCAAATGCATAAATGTGAACAGTGTTCGGATATGTTTAAAGATGAATTTGaactttgcaaacatataaaTTTGGCACACGGTCAAACTAGTAATTTAACAAGTATGATGGCCATTGTTAAGAAGGAAGAAGAAGATATAAAGAACAATTTCCAGTGCACAAAATGTTCAGATATATATATGGAATGGGAACAATTGAAATTACACTACGAACAATGTCATCGTAATGTTGAACAGACACAATGTCAAATATGTGGTGAAATTTTACCCGGAAATGAATTGCAAAAACATATAAAAGCTTTgcatatggataacgattttcaaTGTAAATATTGTGAATTTAAAACGAAGATTAAGTTAAGTTTGACTCAACATATGTTAAGGCATAAAAATGCTGCGACAATACATTGTGAATATCCAGGTTGTAGATATAAAACGTTTTATGAAGGTGCTATGGAGAAACATAGAAGGAGGCATGCCGATCAAGGAGTTAAACTCCAGTGTACGCAATGTCCGTTTCAAACTATGAATaagtacatattaaaatatcacgAGGAAGCTCATGAAACAGGAGTAAAACGATATACCTGTGACCAATGTGATTATGCCACAATTTTACCGGCAAATTTAGTTCAGCATAAGTACAAACATTCAACTGAGAAACGGTTCAAATGTGATGTGTGTCCGTTTgctacaaaatataatacttcCTTACGGTTTCATGTTAGAAAGAAACACTGTGATCTCCCAACATCCAGTTAA
- Protein Sequence
- MEEKEIKVEIKLERQDPTSFLPDEPMSYEIKKKKKKKKKHLQEDPFKDIDDVKTTIIEIMPASLDPEVNIKVENIEVELDFNDFTDNTGLMLESHHSDDSQEPAVKIENQNHEAVILTFESVINNKPIMPQETEEEDLNIDIKPRHFCKLCHLVFQSTKTLRVHQKRKHKIFRKSFKHICDYCGMSYEMKNSLAAHMKRKHGPNSIPDDREERTCEICALVFKGMARLRMHMRRKHGSFQDSFKYECKDCGLTYDKYRSLIVHVQRKHTNDRKPEIGQLYNCLFCSKMFAKRETYARHVQRKHQVDEDNIKQEKDMDLENCKNDKTGEITCKECPLVFSSVNFLKLHMRRKHNALREDFRLKCRICNLSYNKIESLKRHVRRKHDKSSHCEVCNKQFDTREMYLNHSHTKVIKECSICGLIFASQGGLAKHLRCTHKIDTPKTIFCSICQEGFHDKRQLKPHFMKVHLKASYTCRYCKKIFKAKESYRRHVLFKHPTAEHVNSQMHKCEQCSDMFKDEFELCKHINLAHGQTSNLTSMMAIVKKEEEDIKNNFQCTKCSDIYMEWEQLKLHYEQCHRNVEQTQCQICGEILPGNELQKHIKALHMDNDFQCKYCEFKTKIKLSLTQHMLRHKNAATIHCEYPGCRYKTFYEGAMEKHRRRHADQGVKLQCTQCPFQTMNKYILKYHEEAHETGVKRYTCDQCDYATILPANLVQHKYKHSTEKRFKCDVCPFATKYNTSLRFHVRKKHCDLPTSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00932998;
- 90% Identity
- iTF_00932998;
- 80% Identity
- -