Ldis043310.1
Basic Information
- Insect
- Lymantria dispar
- Gene Symbol
- -
- Assembly
- GCA_032191425.1
- Location
- CM063471.1:13122865-13124231[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.001 0.12 14.2 1.3 2 22 128 148 127 151 0.89 2 10 0.13 16 7.6 0.0 3 23 155 176 154 176 0.95 3 10 1.2 1.4e+02 4.6 0.9 2 23 182 204 181 204 0.92 4 10 8.4e-06 0.001 20.8 0.4 2 23 210 231 209 231 0.96 5 10 0.54 64 5.7 1.2 2 20 235 253 235 255 0.91 6 10 1.8e-06 0.00022 22.9 1.0 1 23 281 304 281 304 0.95 7 10 0.00017 0.02 16.7 0.5 1 23 310 332 310 332 0.95 8 10 0.038 4.5 9.3 0.1 1 23 338 360 338 360 0.97 9 10 0.002 0.23 13.3 0.3 1 23 366 389 366 389 0.94 10 10 5.9e-06 0.0007 21.3 1.5 2 23 396 418 395 418 0.95
Sequence Information
- Coding Sequence
- ATGTTTGTAACCGTTCTAGTGAGAAGTGAAAGTTCATTTTGGATTATATCATTCCAGATCAAAGAAGATACCCTAGTACCAGTGGGTACGTGCGTTGCTTGTGCCACAACGGCACTCGCCGCTCAGGAGTTCCGCCTCTTCGTCTTAAATTCACAAAAAACATGGCACAAAGCCCTTATCAATCTCGCGATATTACCATTGGCGGTCTCGCCTCCTATGAAGTCTATGTGTGCTTTCGTCAAGCCAAGTGATCTATCCATACAGACTTTCAGAGATTACACACAGAGTAATGCCACGATTTTACTGAATAGACTAAAAAATAGAATTTCCAAAAAACCCATTGAAAGAAAACCCAGAGGTGCACGGTCAGGCCCATCCTGCAATTGTCCTGATTGTGGCAAAACGTTTTTAAGTCCTTATTTCTTAAATATGCATTTGAAGAACAGCGGTCATAAAGAAGCTTGTCAAATTTGTGGTTTAGTTGTCGCCAGGGGCAAGGAAATGAAAGATCATTTATCTTCGGTTCATAATGAGACTGCATTCTTATGTAAACAGTGTCCAAATTTGTtcttaaatgaaattttattgaaGAAACATACGAAAAAGGGCCACAAAGCGGGCGCTTTGACTTGTTCCGATTGTGGTCGTTCGTTTCCAAGGCAAGCGTCCTTCGAAAGTCACTCACAAATGCATGCAGTCAGGACTTGCAGAGCGTGTGGAGTCCAATTCACCAATCGTGGATGTTATAGAGAACATAGATCACAATGCGAACCAAATGCAAAACCAAACGCCCAAAATTACCCAAGAAACCGACGGTCTAATATCCGTGATCCAGCTCAATTCACTTGTGATCATTGCGGTAAAACTTATAACTCTAGACCGCAACTTAAAAACCATATAATTTGGATACATATGAATATAAGACCTCATCAATGCCAGTGGTGCGGAAAGAGATTTTATACGCCCGCGCGTTTGGCTGAACACACTGTTGTCCATACGCGCGTTAGAAATTTCGAATGTGATATTTGTGGCGCCAAACTTGTATCCAAAATGGCCGCCGTTTATCATAGGCGAAGGCATACCGGTGAAAGGCCTTACGAGTGTGAGGATTGTGGCGAAAAATTTATATCGGCTTCTCGAAGATCTGAACACGCTAAACGTAGACATAACAAAGGATATAGGTTGCCTTGTACCAAATGCCCGGCTAGTTTTGTTAGGAAACACGAACTGAAAAAACATATGGAAAGATCTCACAGAACATTAGACAATATAATTTGGTGA
- Protein Sequence
- MFVTVLVRSESSFWIISFQIKEDTLVPVGTCVACATTALAAQEFRLFVLNSQKTWHKALINLAILPLAVSPPMKSMCAFVKPSDLSIQTFRDYTQSNATILLNRLKNRISKKPIERKPRGARSGPSCNCPDCGKTFLSPYFLNMHLKNSGHKEACQICGLVVARGKEMKDHLSSVHNETAFLCKQCPNLFLNEILLKKHTKKGHKAGALTCSDCGRSFPRQASFESHSQMHAVRTCRACGVQFTNRGCYREHRSQCEPNAKPNAQNYPRNRRSNIRDPAQFTCDHCGKTYNSRPQLKNHIIWIHMNIRPHQCQWCGKRFYTPARLAEHTVVHTRVRNFECDICGAKLVSKMAAVYHRRRHTGERPYECEDCGEKFISASRRSEHAKRRHNKGYRLPCTKCPASFVRKHELKKHMERSHRTLDNIIW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00786248;
- 90% Identity
- -
- 80% Identity
- -