Basic Information

Insect: Lymantria dispar
Gene Symbol: -
Assembly: GCA_032191425.1
Location: CM063467.1:17244373-17258764[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 8.5e-07 0.0001 23.9 1.9 1 23 282 304 282 304 0.98

2 9 6.2 7.5e+02 2.3 0.1 13 23 311 321 309 321 0.89

3 9 2.2e-06 0.00026 22.6 2.3 1 23 327 349 327 349 0.98

4 9 5e-05 0.006 18.4 0.4 3 23 357 377 355 377 0.97

5 9 1.3e-05 0.0015 20.2 1.6 1 23 383 405 383 405 0.99

6 9 2.6e-05 0.0031 19.3 0.7 1 23 411 433 411 433 0.99

7 9 7e-06 0.00083 21.0 0.7 1 23 439 461 439 461 0.98

8 9 1.6e-05 0.0019 19.9 2.8 1 23 467 489 467 489 0.98

9 9 0.35 41 6.3 0.3 3 23 497 518 495 518 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	8.5e-07	0.0001	23.9	1.9	1	23	282	304	282	304	0.98
2	9	6.2	7.5e+02	2.3	0.1	13	23	311	321	309	321	0.89
3	9	2.2e-06	0.00026	22.6	2.3	1	23	327	349	327	349	0.98
4	9	5e-05	0.006	18.4	0.4	3	23	357	377	355	377	0.97
5	9	1.3e-05	0.0015	20.2	1.6	1	23	383	405	383	405	0.99
6	9	2.6e-05	0.0031	19.3	0.7	1	23	411	433	411	433	0.99
7	9	7e-06	0.00083	21.0	0.7	1	23	439	461	439	461	0.98
8	9	1.6e-05	0.0019	19.9	2.8	1	23	467	489	467	489	0.98
9	9	0.35	41	6.3	0.3	3	23	497	518	495	518	0.87

Sequence Information

Coding Sequence: ATGGATAAGTTATCGATGTGTAGAATATGTCTAGTTAAAGACGTTAAAATGTATTCCTTGTTCAGTGCTGAGCTGCAGGAATTGTATGAGAGGCTGACGAGGACGCCATTTGAGACAAAGGATAAGAAACCGGTACAAGTATGTTACTTATGCTGTGCAAGACTTCAGAACTGCTATCGTCTGCAGGCTGCATGTCTTAAAAGTGAAGAGTTCTTCAATAAAGTTATAGCAGATAGTGAGTTAAATGAAATGGAGTTACAAGATTTGAACACACTCAAAACAGTACACCCATTAATACTTATAAGTTGTGAGCCATTAACTAGAAAGGACACCGAAGATGATAAAATAGATGAAGACaatgattttaaatttgaacctTTAGAAATTCCATCtgatgttcaaataaaacatgaaCTCGTTGAAGCTGATATTAAATTAGAGGGTACTGTTACAAATGAGGATATTTGTATAGAGCATGGTGACATATTAGATAATAGCCACACAATGGAGGATACAGAATTAAAACATGATATATCTCTAAAAATTGAAAAGATTGTTCCAGAGAGAATAAACTTGGAACACTTTAAAATAGATGATTCGTTTACTACTGAGGAAGTTAATATCAAATCAGAGGTTACTGTTGAAGAAGAGGATATTACAGAAGATAGTGTCATGTCTTATAATAGACACACAATGCAGAATACAGAATTAGAACATGATATACATCTAAAACctgttaaaattgttttaaagagAATCGATTCAGAAGTTTCTGAAACAGatCTAATTGCAGCTAAGAAGCCAAAACTACCGGATGGAAATACTGACGCTGGTGAAAAACCATATATGTGTAAAATATGTGAAAAAAGCTACGCACGGAAGAAACAATTGATTCAACATACACGAACGCACACTGGTGATAaaccatatAAGACTCAATTGGTGGATCACATACGTATGcacaccggtgagagaccacacAGATGTAACGTATGTGAACAAAGTTTTACTACGAACAGTGCGTTACAAAGACATAGCCGAATACACGCGAGTGAAAAACCATATGGGTGTAATGTATGTGAGAAAAAATTTATTACAGAGAGCGATTTAAGTAAACATAGCCGTGTACACACTGGTGAGAGACCGTATAAATGTGACATGTGCGAGAGAAATTTCACTCAGAAGTCGAGATTAATCATTCATAGACTTACACATACTGATGAAGGACCGTATAGATGTAACACATGTGGGCAAATTTTTGCTCAGAAAGAGAGATTAGTGATTCATACACGTAAACATACGGGTGAGAGACCGTATAGATGTAACGTATGTGGACACAGTTTTGTTGAAAAGAGAGATTTGACTGCACATGGCCGTATACACAGTGATGTAAAACCATATAAGTGTAATATATGTGAGAAGAGTTTTTATAAGAAAAGCGCTTTAGTGAGTCACACTCATGTACATACCGGTGAGAGACCCTATGGATGTAATGTATGCGAGAAAAGTTTCGCTTGGAAAGATAGTTTAGTATTTCATATGTTTAGTAGTCATTCTGCTCAGACGCCGTATAGGAGTGACAATATCGTGAGAAaagtattaaaaagaaatagtgATTCCAATGAAAAACCACTAAAATGTGTTTATGTGAGAAACGTTTTATCTTTAGATATATGTACTAAATTACCTTCATCCATTCCACATTCACGGACATAA
Protein Sequence: MDKLSMCRICLVKDVKMYSLFSAELQELYERLTRTPFETKDKKPVQVCYLCCARLQNCYRLQAACLKSEEFFNKVIADSELNEMELQDLNTLKTVHPLILISCEPLTRKDTEDDKIDEDNDFKFEPLEIPSDVQIKHELVEADIKLEGTVTNEDICIEHGDILDNSHTMEDTELKHDISLKIEKIVPERINLEHFKIDDSFTTEEVNIKSEVTVEEEDITEDSVMSYNRHTMQNTELEHDIHLKPVKIVLKRIDSEVSETDLIAAKKPKLPDGNTDAGEKPYMCKICEKSYARKKQLIQHTRTHTGDKPYKTQLVDHIRMHTGERPHRCNVCEQSFTTNSALQRHSRIHASEKPYGCNVCEKKFITESDLSKHSRVHTGERPYKCDMCERNFTQKSRLIIHRLTHTDEGPYRCNTCGQIFAQKERLVIHTRKHTGERPYRCNVCGHSFVEKRDLTAHGRIHSDVKPYKCNICEKSFYKKSALVSHTHVHTGERPYGCNVCEKSFAWKDSLVFHMFSSHSAQTPYRSDNIVRKVLKRNSDSNEKPLKCVYVRNVLSLDICTKLPSSIPHSRT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00931732;
90% Identity: -
80% Identity: -