Basic Information

Insect: Lymantria dispar
Gene Symbol: -
Assembly: GCA_032191425.1
Location: CM063450.1:7830376-7861276[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00059 0.07 15.0 3.1 1 23 234 256 234 256 0.97

2 11 0.00035 0.042 15.7 6.5 1 23 262 284 262 284 0.96

3 11 0.0024 0.29 13.1 6.9 1 23 290 312 290 312 0.98

4 11 0.001 0.12 14.3 1.0 1 23 318 340 318 340 0.97

5 11 3.9e-05 0.0047 18.7 0.5 1 23 346 368 346 368 0.96

6 11 5.8e-06 0.00069 21.3 0.2 1 23 374 396 374 396 0.98

7 11 7.9e-05 0.0094 17.7 0.4 1 23 401 423 401 423 0.96

8 11 1 1.2e+02 4.8 3.2 3 19 431 447 430 453 0.90

9 11 3.9e-05 0.0046 18.7 0.4 1 23 532 554 532 554 0.97

10 11 0.00014 0.017 16.9 1.4 1 23 618 640 618 640 0.96

11 11 4.1e-05 0.0049 18.6 4.3 1 23 650 672 650 672 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00059	0.07	15.0	3.1	1	23	234	256	234	256	0.97
2	11	0.00035	0.042	15.7	6.5	1	23	262	284	262	284	0.96
3	11	0.0024	0.29	13.1	6.9	1	23	290	312	290	312	0.98
4	11	0.001	0.12	14.3	1.0	1	23	318	340	318	340	0.97
5	11	3.9e-05	0.0047	18.7	0.5	1	23	346	368	346	368	0.96
6	11	5.8e-06	0.00069	21.3	0.2	1	23	374	396	374	396	0.98
7	11	7.9e-05	0.0094	17.7	0.4	1	23	401	423	401	423	0.96
8	11	1	1.2e+02	4.8	3.2	3	19	431	447	430	453	0.90
9	11	3.9e-05	0.0046	18.7	0.4	1	23	532	554	532	554	0.97
10	11	0.00014	0.017	16.9	1.4	1	23	618	640	618	640	0.96
11	11	4.1e-05	0.0049	18.6	4.3	1	23	650	672	650	672	0.97

Sequence Information

Coding Sequence: ATGTGTATGCCAACCCCTAATAATGTTTCGGGCTTCGGTTACTCGTGGGGTTTCACTAGTTCTGCGGATCTTACTAAGGGAGAAGTTGACACTCCGAGCAGCTTGAGTTATTCCTTAGGAAATACGGTATCACCTGAAACGACATTGACTGTTATGTCTACAAACAAACCAATAGTTCAAGAAAAAGTTGGTACAGTAGTTGCTGTATCAAATTCTGGAGCACAGATATCAAGAGTAGTTACAACTGCGAACCCACTACCCACAAGGAGGGCAATGTTTGTGGTTAATGATGCACCTGCACATGCACTGAGTAGGGTGTCACAACAAAATCAGACTGCAACTATACAAACAACAAATCTGGCAGCTAAGCCCTTTATGACTCCAATCGGTCCTCTCCAATTAACAGCCGAAGAATGTAATGAGATTCTAATGAAACGGGCGTTACAAGCCCAAGGTATACCAACTCCTGTTATTGATGCCTCGCAACTGAATCACACGCTACTGAATGGTAGTCTAAAGAGTTTAGCCGAAGCGACATCTCAACAAACTGACAATATACAAACTACAACGGTACATCAACATCATTTGCTACACACTAAACAGGAGCCGGGCACAGCGAATAATTCGCCAAAAACGGAAATGCTGAACACGAACACCATGGTGACATCACAGCCTACAGGTACGGTGAAAGAGCGACCCTATTCCTGTGGAGAATGCGGCAAATCTTTTCTACTGAAGCATCATCTGACGACACATGCGAGGGTGCATACTGGTGAAAGGCCACACGTTTGCGCTCATTGTGGAAAAGCGTTTGCTCGCAAGCATTGCTTGAATACCCATCTGCTTCTTCATTCAGCAGAACGGCCTTATAGGTGTCACGAATGTAAAATGGCGTTCACGTTGAAACATCATCTTGTTACACATTCTAGgGTTCACAGTCGTGATCGACCGTTTGTCTGTGGCGAGTGCGGTCGTGGTTTTCCTTTAAAGCGACATCTAGTGACACATAGCAAGTATCACGCTGGTGAACGACCCTACATCTGTGCTGAATGCGGGGAGAGTTTTGCGCAAAAGGATCATTTAGTGATGCACAGCCGGTTCCATGGTTCCCTATCACCGTATGTATGTAGTGATTGTGGTGTGACGTTCGCGCGGAAGTTCCAGCTTGTCAACCACGGTCGAGTTCACGGGCGAGTGCCGCACGCATGTCCTGTATGCGGGAAGGAGTTCCTGCAGAAGAGAACACTTGTAGCACATATGAAAATCCACACCGGTGAAGGTGCAGTCGCATGCCTGGAATGCGGTGAAGCCTTTAAATGCAAATCTGAATTACAAGAGCATTGTAAAATGACGCGGCACTGTCTCGCACCaacacaacaacaacaacagcaAGCACAACAACAAGCACAACAACAGGCCCAACAACAAGCCCAACAACAAGCGCAACAGCAGGCCCAACAACAAGCACAACAACAGGCGCAACAGCAAGCACAACAACAAGCGACTGTCATTAAACAAGATGATTTTAAACCGCAGATTGTACAGGTGATAGGTGCCGATGGTCAAATAGTGACTGAAAAGTCTTCACCTGCATACGCGTGTCCAGAATGTGGCTCCTGTTTCAACACTAagGAGGCGTTGTCTTTACACGTACGATTGCATGCGGGCGACCGTACGTGCGTCAACGACTTGTGCGCGCTTACCGCAGCACTGCAGCCAGGTCTTGTTGCCGCAGCACATCACGCCACTCAACATCAACCAATACAAATAATAACATCGAATCCCAACAATGTTGTACATACGCAAGTAATAGCCACTAATCATCATTTATCGACTTCCCGACCGAAAATTCATTTTTGCGGCGAGTGTGGGAAAGGATTCGCGGCTAAGCATGGTCTATTAGCACATCAGAGAAGGCATCCTGACGGCAGCTGTACCCTTCGTACGCACGTGTGTGATCAGTGCGGTAAGGCGTTCTTCCAAAAGAATCATCTAATGCTTCATCAGAGACAACACATGGACTTGCCACCTAGATCTcaAGCAGTATCACAACAATCTCAGCAACAAGCTGCACAACAAGCAGTGCAACAGGCGCAACAAGTTCAACAACAGGTGCAACAGCAagtacaacaacaacaacagcaACAGCAGCAACAACAACATCAGAATAGTTTAGAATTGGACCAGGATCACCAACAGGCGACACATATACAAGTAgTAACAAATCGATCTGGACAAGTCATAGGTAACCAGATAGTGGTGGGTACGGTTGGTGGAGTGGTGGGCAGGCGGCTGATGCCGTCACAACTACACATTGTTGGCAGAGACACCAAGCCCCAGATCACCCACATACCCCACAATAAACACCACAATGCTAGACAACACACCACCAGTGGCGACGCAAAGGAAGTTGGAGGTTTGGTTCTGTCTGCTGGTCGGAATGGACTTATAAAGTATGAGATTTCACTACCGCAGCCTGCTTCTGTGGTACAAGTACAGCAACTAGACTGA
Protein Sequence: MCMPTPNNVSGFGYSWGFTSSADLTKGEVDTPSSLSYSLGNTVSPETTLTVMSTNKPIVQEKVGTVVAVSNSGAQISRVVTTANPLPTRRAMFVVNDAPAHALSRVSQQNQTATIQTTNLAAKPFMTPIGPLQLTAEECNEILMKRALQAQGIPTPVIDASQLNHTLLNGSLKSLAEATSQQTDNIQTTTVHQHHLLHTKQEPGTANNSPKTEMLNTNTMVTSQPTGTVKERPYSCGECGKSFLLKHHLTTHARVHTGERPHVCAHCGKAFARKHCLNTHLLLHSAERPYRCHECKMAFTLKHHLVTHSRVHSRDRPFVCGECGRGFPLKRHLVTHSKYHAGERPYICAECGESFAQKDHLVMHSRFHGSLSPYVCSDCGVTFARKFQLVNHGRVHGRVPHACPVCGKEFLQKRTLVAHMKIHTGEGAVACLECGEAFKCKSELQEHCKMTRHCLAPTQQQQQQAQQQAQQQAQQQAQQQAQQQAQQQAQQQAQQQAQQQATVIKQDDFKPQIVQVIGADGQIVTEKSSPAYACPECGSCFNTKEALSLHVRLHAGDRTCVNDLCALTAALQPGLVAAAHHATQHQPIQIITSNPNNVVHTQVIATNHHLSTSRPKIHFCGECGKGFAAKHGLLAHQRRHPDGSCTLRTHVCDQCGKAFFQKNHLMLHQRQHMDLPPRSQAVSQQSQQQAAQQAVQQAQQVQQQVQQQVQQQQQQQQQQQHQNSLELDQDHQQATHIQVVTNRSGQVIGNQIVVGTVGGVVGRRLMPSQLHIVGRDTKPQITHIPHNKHHNARQHTTSGDAKEVGGLVLSAGRNGLIKYEISLPQPASVVQVQQLD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00932957;
90% Identity: iTF_00932957;
80% Identity: -