Ldis042889.1
Basic Information
- Insect
- Lymantria dispar
- Gene Symbol
- -
- Assembly
- GCA_032191425.1
- Location
- CM063471.1:5448789-5452334[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0094 1.1 11.2 1.1 1 23 28 51 28 51 0.97 2 19 1.8 2.1e+02 4.0 0.1 2 23 77 99 76 99 0.91 3 19 0.017 2 10.4 2.9 3 23 124 144 122 144 0.96 4 19 0.00031 0.037 15.9 0.3 1 23 148 170 148 170 0.97 5 19 0.00073 0.087 14.7 0.5 1 23 177 200 177 200 0.97 6 19 0.0015 0.18 13.7 1.3 2 23 208 230 207 230 0.95 7 19 6.6e-06 0.00079 21.1 0.8 2 23 236 258 235 258 0.97 8 19 1.2 1.5e+02 4.5 1.0 1 23 264 287 264 287 0.89 9 19 9.8 1.2e+03 1.7 0.2 1 7 293 299 293 302 0.89 10 19 0.021 2.6 10.1 0.0 1 23 347 370 347 370 0.95 11 19 0.14 17 7.5 0.2 2 23 397 419 396 419 0.94 12 19 0.0075 0.89 11.5 1.1 2 23 442 463 441 463 0.95 13 19 0.052 6.2 8.9 0.1 1 23 467 489 467 489 0.93 14 19 0.042 5 9.2 4.3 1 23 494 517 494 517 0.96 15 19 1.2 1.4e+02 4.6 3.7 2 23 525 547 524 547 0.85 16 19 2e-05 0.0024 19.6 1.9 2 23 555 577 554 577 0.96 17 19 7.7e-05 0.0091 17.8 0.9 1 23 583 605 583 605 0.98 18 19 1e-05 0.0012 20.5 1.3 1 23 611 633 611 633 0.99 19 19 0.00016 0.019 16.8 4.3 1 23 639 662 639 662 0.97
Sequence Information
- Coding Sequence
- ATGAAGAAACAGTGGCATAATTTGACCACATTGCTCAAGTGCTCAAATGTTACGCCATTCAAGGACAGGAATGACGCTGGCTACATTTGCGCTTATTGCTTCAAAACATACCCCAATCCTGATATACTTAGGAATCATACTCATACTGATCATGCAAAGGAAAAACCTTCGTATAAAGCAGGAACTGGAATGGCCAGTTTTGTAGCCTTTCTCGATATCGTAGATCTAAAATGTACACTCTGTGATCAATCTATGGATTCTATACTAACTTTAACAGAACATTTGGTTACTATCCATGATAAAAAATACTATCTCGGCGTAACGGATTACTTTCAACCTTTCAAATTAACTAACGAACAGCAAATCAACTGTTGTCTTTGCAATGAAGCATTCCATAATATGAAACTTTTGATGCAACATATGAATATACACTACAGAAACTTTATTTGCACTATTTGCGGCGCCGGTTTTGTAAATTCTTTCCGATTGAATCGTCATGAAACGACACATGGAAAAAAGAAAAGTAGTTATCCTTGTAAGCATTGTGGACAAGTTTTTGCTGCGGAATCTAAAAAGAAGGCCCACGTAAATACAGAACATAAAGGAATAGCCGGTGATAGTGTTTGTCAGATATGCAAAGCGAGATTCAAGAATTATTACCAAAAAACTAGACATATGATGCAAGTACATAATGCTGAAGGTATTAAATGTGATTTGTGCGAGAAAAAGTTTAATTTGAAGTCAAATTTGATGCTGCATATGAGAAGTGTTCATTTGAAGGAACGACCTTACGAATGTTCAGTATGTAGCAtgggtttctttattaaaaggCATATGCTAGGTCACTATATGGCAACTCATACTAATGAGAGGAAATTTAAGTGCGAAGTGTGTGGTGTCCGACGTAATGCCGGAGAAACGGCTCGTGAAAAACTAGTGAAACCCAGAATTTATGAGTTGGACAAGCACAGGCATAACATTCGTCTTATACTTCAGTGTTCGAACGCAACTCCCATTAGATGTAGGGGAGGCATCGGTTACGCGTGCAGCTTTTGTGGAGACGAATATCCAGATCCTGCAGACTTAAAAACTCACACATCTATATCACACGATGATAAGACGAAATTGAAATTCATGTCTGGAAAAATGATGTTCTCATATCTGGTCAAACTTGACATCACAAATCTTTGTTGTAAAATATGCGATGCTAAGATAGGTACTTTAGAAGAACTAACCGATCATCTCATTAAAGTGCATGGCAAACCACTTCATACGGACATAAAGAATCATATAATGCCTTTCAGATTCTTAGACGATATACTATCGTGCATGTATTGTTCAAACGTTTATAACAAGTTTAAAAATTTGCAGCAACACATGAATGCGCATTTCAGAAATTTTGTTTGCGAGTATTGTAATGCGGGATTTATCAACAGGCATATATTAGCCGCTCACACAGAAGCACACAAGCTAGGTACATTCAAATGCGATTTATGCTCCAAGGTATTTGATACTCATCGCAAAAAGAAGAGTCACGAAAAATCTGTTCATATACACGCAAATTTATTGAGCAAATGTGGGTACTgcaatttaaaatttacaaattataaaaggAGGGATCACCATCTGTCCAAAGTGCACGGTGTAGAATTGAAAGCGATCAAATGTCATGCGTGTGATAAGACCTTTGATAATAAAAGTGCTTTAACAATTCATACGAAGCGAGACCACTTGATGGAAAGACGATACAAATGTACGGAATGCGATATGACATTTTTTGGATCGAATGAGCTGAAATTGCATATGGTAAAGCATACTGGATTAAGAGAGTTTAAATGCGATGTGTGTTTGAAGTCATACGGTAGGAAGAAGACTTTAACGGAACATATGAGGATACACAATGATGATCGAAGATTTAAATGTGAACATTGTGGTCAAGCATTTGTACAAAAATGTAGTTGGAAAGGTCACATGAGAAATAGGCACGGAGAgttagttttataa
- Protein Sequence
- MKKQWHNLTTLLKCSNVTPFKDRNDAGYICAYCFKTYPNPDILRNHTHTDHAKEKPSYKAGTGMASFVAFLDIVDLKCTLCDQSMDSILTLTEHLVTIHDKKYYLGVTDYFQPFKLTNEQQINCCLCNEAFHNMKLLMQHMNIHYRNFICTICGAGFVNSFRLNRHETTHGKKKSSYPCKHCGQVFAAESKKKAHVNTEHKGIAGDSVCQICKARFKNYYQKTRHMMQVHNAEGIKCDLCEKKFNLKSNLMLHMRSVHLKERPYECSVCSMGFFIKRHMLGHYMATHTNERKFKCEVCGVRRNAGETAREKLVKPRIYELDKHRHNIRLILQCSNATPIRCRGGIGYACSFCGDEYPDPADLKTHTSISHDDKTKLKFMSGKMMFSYLVKLDITNLCCKICDAKIGTLEELTDHLIKVHGKPLHTDIKNHIMPFRFLDDILSCMYCSNVYNKFKNLQQHMNAHFRNFVCEYCNAGFINRHILAAHTEAHKLGTFKCDLCSKVFDTHRKKKSHEKSVHIHANLLSKCGYCNLKFTNYKRRDHHLSKVHGVELKAIKCHACDKTFDNKSALTIHTKRDHLMERRYKCTECDMTFFGSNELKLHMVKHTGLREFKCDVCLKSYGRKKTLTEHMRIHNDDRRFKCEHCGQAFVQKCSWKGHMRNRHGELVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -