Ldis002552.1
Basic Information
- Insect
- Lymantria dispar
- Gene Symbol
- L
- Assembly
- GCA_032191425.1
- Location
- CM063441.1:20199948-20242449[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.8e-06 0.00022 22.9 1.7 1 23 87 109 87 109 0.99 2 15 0.78 93 5.2 5.8 1 23 115 137 115 137 0.97 3 15 1e-05 0.0012 20.5 4.1 1 23 143 165 143 165 0.99 4 15 3.2e-05 0.0038 19.0 0.1 1 23 171 193 171 193 0.98 5 15 4.2e-05 0.005 18.6 0.1 2 23 209 231 208 231 0.94 6 15 0.37 44 6.2 0.0 3 23 330 350 329 350 0.97 7 15 0.2 24 7.0 0.0 3 23 365 385 364 385 0.91 8 15 0.00065 0.077 14.9 0.5 1 23 393 416 393 416 0.94 9 15 0.018 2.2 10.3 0.1 1 23 421 444 421 444 0.92 10 15 0.0016 0.19 13.6 0.0 1 23 505 529 505 529 0.97 11 15 0.00024 0.029 16.2 0.1 2 23 592 613 591 613 0.96 12 15 0.071 8.5 8.4 0.0 1 23 621 643 621 643 0.97 13 15 2.2 2.6e+02 3.7 0.1 3 23 749 769 748 769 0.95 14 15 0.0043 0.51 12.3 0.1 1 20 777 796 777 799 0.95 15 15 0.19 22 7.1 0.3 1 23 806 828 806 828 0.94
Sequence Information
- Coding Sequence
- ATGATCATGTTATTCAAAGGCAACAGCAGCAGGCTGGAGCATCTTATAGAGAAGATTCAAGCTAATAAAGAAAATCACGACGTTACTTCTGAGGATATAAAAGAGGCACTGGGCAGCGTGGCCAGTACCGCGGGGAGCTCTTGGCCATCATCGACGCCGGAGCCATCACCATCACCCGCTTCTACGCCAACGTCGGCCGACGCAGCTGACGCAGAAGCTGAACCACCATTTACGCTCGGTGCTACTGAACACACTCCTTACCAGTGCCAATTCTGTGATAAAGCCTTTCCCAGGCTCTCGTATCTCAAGAAACATGAACAgACACATTCCGATCAGATGCCATTCAGGTGTGAGTTTTGTTCACGACTATTCAAGCACAAACGATCACGTGATCGTCATGTCAAACTGCATACTGGTGATCGCAAATACCGCTGCGCTCATTGCGAGTCTGCTTTTTCAAGAAGCGATCATTTGAAGATCCATATGAAGACACACGATAACCAAAAGCCGTTCCAGTGTACTGTGTGCAACCGTGGTTATAATACTGCTGCAGCTTTGACATCACATATGCAAGGCCACAAGCGTGATCGAGAAGGACGCGAGACCGATCGACGCCGTGCGTTAAGATGCTTAAGATGCGGAGAGGCCTTTAGAAGACCAGATCTATTGCAGGCACATATGGTAAGCTCTCATGGAATCGACGGTGCAGCCATGACACCACCCCGCCGAGTCGCGTCACAGCCGCCACCTACTTTACTTGCATGTATCTACTGTACACGGGATACATTCACTAGCATGGAGCAACTGCAACTCCACGTTCAAGCCACACATTCTGCTCTACTAAACGGCGAAACTCCGATACAAACAGTTGAGCAACCAGCGCCTACTGATCTTAGTCGACGTACGATGGACGAGAGCCCACAAATCAAACGACCTCGATCAGGATCTGGAACACCAAAAGCAACGCTCTCACCTAGCACATTACTTTGTAACCAATGCGATGCAGCTTTACCAGATTTTGAAGCGTTTCGTGCTCATTTAAAAGGTCATCTtgaagaaggtggtgaattaaatCGATTGAGTCCTGGTCCATGCGTCCATTGCGGTGCTACGTTTGCAGATGCAGCTGCTTCTGAGCGTCACCTTACAGCTCATTATTTAGCTGTATCTTGTGAATATAGCTGTCATAGTTGCGCCCGAAGTTTCTCAGCCCCTGATGAGTTACAGAAACATCTTCTGGATCTACATGCACACCATCTCTATCGTTGCACCCTATGCAAGGAAATGTTCGATTCTAAAGTGGCTATTCAGGTTCACTTCGCAGTAGCACATAGTGGCGAGAACAAAGTGTGGGTATGTCGATCATGCGGATCAGGCGCTGGTGCTTTACGTTCAGAGGCTGAGGGAGCGGCACATGTACGCGCAAGACATGCAGGGGCAGTGCCGCGCTGCGCTTGTGGAGCATTAGTGGGTGCTGCACTGACTCCAAGGGCAACACGCAGCCACCGACCCTATCGCTGCCCAGTACCTGGCTGCAACGATAGCTTTGCTgtacaatatttattagaaagaCATATGGAAGCCCACCAAGCAATACCTCATCAGATTTTAAACGGTGAAATGACAAGACAGAAAAGATTGGACTCCAGTAACGGTGGAGATGGTTGCGATGGTGAGAGGTCTCCGTGTACTCCTGGCGCTGAAAGCAATGGAGCATCTGCCGCTATTCCAACTGTTGAAGAGCGACGACGTAAAAATGGCGCTGTTGCACTACAATGTGCCTATTGTGGGGAACGTACTCGTAGTCGCGCCGAACTTGAAGCTCATACTCGTGCGCACTCTGGTGCTGCAGCAGCTCGTCATAAATGCCTCATTTGCGACGAAGTATTGCCTTCCGCTGCAGTTTTGGCTGAACATAAGCTAACGCATTGCAAAGTGGTATCTGGTGATACATGCTCCAGATGTCGTGCACGTTTGTTATCAGAGGAATCATTCTTGAATCATATGGCTCGGCATCACCCTGCATTACCAGCCCCATGCGTCGTATGTCGTCAAACATTGGCATCAGAGGCTGAAGCTCGCCTACACGCACGTTTTCATTTAAGATCTGGCGATGATGAACAAAGGTGTGCAATTTGTTTGCGTGCTTTACCTGAAGGAGAGGCCGGTGAAGGTGCTAGGGCCTGTTCCGCTTGTTACGCTCGTCATGCTGCTCCACGACCTCCTGCTCCAGCTGACAACGATTGCCGCTTATGTCGTCGAGCACTGGGATCACCAACTCGATTACAGGCGCACCTTATCGAACATACCTTTGCAGGTATCGGTGCTTTTACTTGTTATCTATGCTCAGCTGTATTCACGAGTGCAGCAGGCTTGCAACGACATTTACCTGAACATGCAACAGCGCCCCGACCTTACGACTGTGCACGTTGTGGCTTGAAGTTCTTTTTCCGAGCAGAACTAGACAATCATGCATTTGTTCATCTTGAAGAGGCAGAGATAGCCCAACGAGCATTCTATGAGGCATATGCTCGTGGTGCTGCAACGGCCTGGGCCGCTTTGACACCATCAGGTACGCCTCCGaccgaaataaaaaaagagcCAGAGATTAAGGAAGAAAAAGGGAATGATGAGTATATTGAAGTGTCATCTCCACCACCAGCACAGTCCACTACAACTTCCACGCCTCCTTCACCACCAGTAATCAAACAAGAGAAACCGGACGAGGAGTAA
- Protein Sequence
- MIMLFKGNSSRLEHLIEKIQANKENHDVTSEDIKEALGSVASTAGSSWPSSTPEPSPSPASTPTSADAADAEAEPPFTLGATEHTPYQCQFCDKAFPRLSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDREGRETDRRRALRCLRCGEAFRRPDLLQAHMVSSHGIDGAAMTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVQATHSALLNGETPIQTVEQPAPTDLSRRTMDESPQIKRPRSGSGTPKATLSPSTLLCNQCDAALPDFEAFRAHLKGHLEEGGELNRLSPGPCVHCGATFADAAASERHLTAHYLAVSCEYSCHSCARSFSAPDELQKHLLDLHAHHLYRCTLCKEMFDSKVAIQVHFAVAHSGENKVWVCRSCGSGAGALRSEAEGAAHVRARHAGAVPRCACGALVGAALTPRATRSHRPYRCPVPGCNDSFAVQYLLERHMEAHQAIPHQILNGEMTRQKRLDSSNGGDGCDGERSPCTPGAESNGASAAIPTVEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGAAAARHKCLICDEVLPSAAVLAEHKLTHCKVVSGDTCSRCRARLLSEESFLNHMARHHPALPAPCVVCRQTLASEAEARLHARFHLRSGDDEQRCAICLRALPEGEAGEGARACSACYARHAAPRPPAPADNDCRLCRRALGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHATAPRPYDCARCGLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAATAWAALTPSGTPPTEIKKEPEIKEEKGNDEYIEVSSPPPAQSTTTSTPPSPPVIKQEKPDEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01437318;
- 90% Identity
- iTF_00932942;
- 80% Identity
- -