Ldis043240.1
Basic Information
- Insect
- Lymantria dispar
- Gene Symbol
- ZNF296
- Assembly
- GCA_032191425.1
- Location
- CM063471.1:11770753-11804680[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.15 18 7.4 0.1 3 23 104 124 102 124 0.96 2 14 0.0025 0.3 13.0 2.8 1 23 279 301 279 301 0.99 3 14 3.8e-05 0.0046 18.7 0.4 1 23 307 330 307 330 0.97 4 14 0.0026 0.31 12.9 2.5 1 23 335 358 335 358 0.94 5 14 8.1e-05 0.0097 17.7 0.5 2 23 516 537 515 537 0.98 6 14 4e-06 0.00048 21.8 2.3 1 23 543 565 543 565 0.99 7 14 0.15 18 7.4 0.1 2 23 659 680 658 680 0.96 8 14 0.55 66 5.6 0.1 1 15 686 700 686 703 0.84 9 14 2.3e-05 0.0028 19.4 0.2 1 23 795 817 795 817 0.98 10 14 0.017 2.1 10.4 5.1 1 23 826 848 826 848 0.99 11 14 0.00081 0.097 14.5 3.0 3 23 896 916 895 916 0.97 12 14 0.0043 0.51 12.3 3.1 1 23 933 955 933 955 0.96 13 14 2e-06 0.00024 22.7 1.0 1 23 961 983 961 983 0.98 14 14 2.3e-07 2.7e-05 25.7 3.1 1 23 989 1012 989 1012 0.98
Sequence Information
- Coding Sequence
- ATGAATCAAGAAAACGTAAATATGGACCCGCTGAGCTCATATGAATACCCAGCATACGATAGTTACCCATTAAATACACCTCAGATGTATCCCTACAATGTTAAGCTTGAAGATACATTATATTACAAACACAATAATACTAATCATTCCACATACAACAATACTTGTTCACAACCACCGATAAATCAACAAGAGTTAACGAAAGAAGATAATATCGAAGAAAAGAAACCTGTTGTGTCAAACACTAAGAAGGAGAAGAAGAGCTTTTGCTCCGAGAAGATAAATGATACCTCTTTTCCGTTCTATGGTTGTtctgtttgtaatattagttatatgTCATTGTATGAACTCGATCAGCATGTTACGATTCATAAAAATAGAATGACAAGCTATAGATTAAGGCTTAGGAATCAATATAGaaagaaacaaataaaaaaagagaagaaaaagttgaaaaagaaaaagaagattaAAGAAGAGACGGATGTGGAGATTGAAATCAAACCTGAAGATGGTTATATAGGTAATGAAAAAGCCGTAGATTATAATAATACTGTTGGCAACGGAAGTGTTGAGaattgtgaaaataaaaataatgatcaaaataaaaatcaagAGGATGTGAAAAactttgaaaatcttaatagcAATGATGAAAACCAGAAGAATAATGGAGAAAGTTGTAGTAATAATGgagaaaatcttaataataatgGAGAAGGTTGTATTAATAATGATGAAAGTCAAAAGGATAATAGTGAAAATCACAATAGTAATGATGAAAGTCACAAAAGCTGTGAAAACGAAGAAGAATTGAATAATATGgagaaaatttataaatgttttgCTTGCCAAAAGCAATTTACTTTAAGTTATTATTTGAAGTTACATGTTAGATCGCATACAGatgaaAAGCCTTATACCTGTAGTGTTTGTGGTCAGTCTTTTATAACAGCTAGCAAACTTGGTAGGCATAATAAAAGAATACATTTGGCTGCCCGGTTTCAATGCAGAATATGCTTCAAGATATTTTCGAGATTTGAACTTCTGACCAATCATTTTGATAAAAATCATCCCGAGGACAAGTTAGAAGGAGAACCTTACGACTACAATGCCATCTTGCCATATTTGAAAGAGTTAGAAGAGCAATTGAAAGAACAGTCGGAGACTAAAGAACAGAAGACAGAAGACACTTGGTTTGATTGTGATTTTGCTGTTCAGGACTCACTTAAAGAAGAGACCCAAGATGATAGTAAAGAGTTTGCCAAAATTGATGTTGTACTAGAAGATAGAATCAACTGTGAAATGGATGTCGAAGTTAAGATGGAGGAAGAGCACTATCCTGGTGATGACAATATACACGGTGGTGATGACGAGCCAGTTGATGATAAACATGATGATAAGGCCGCTATTAAGGAAGTCGTCAATAAGGATGATAGCTTCTCAGACGAGGATTACTTCCCAGCGAATACGTGGGCAGCTACCCCTAAATGTGATCCATCCCCACCACCTTCTCCGAAACCCAAGAAGAAATTCAAGATGAGTAAATGCGAGATATGTCAGAAAGAGATTAGCTCGGCTTCGTATATGAGGGTTCATATGCGTACCCATACTGGGGAGAAACCCTTCAAGTGTTATAAATGCGGACGGGGTTTCATCACCAGTAGTAAGCTGAATAGGCATACTCTAACTCATGACGTGGATGTGAAAACTGAGGGTATAAAGTTGGAGAAAGATGATATCAAGTCCGAGGGTGAGGAaatcaatgatgatgataagccgGCGAGTAGCaaaatcacaaagaaaaagaagaagttaAAGAAGAAGCTGTCGAAAGATTTGAAAGGTGATGACAAAGTCCGCAGGAAACGGCAGAAGAGACCGCACGCTTGTGAATACTGTAATCAGAGGTTCCTTCACCTCCATATGCTGGAAGTTCACAAGAAGTGCCACGAGGGAGAAGAATTGGTGTTAAAATGTCACTATTGCCTTGAGGAAGCGATTGATGCTGACGCTTTGAAGGAACATGAATCAACACACTCGGGACCCAAGCCTTACCTCTGCACAATATGTGGAAGGAATTATAAGAAGAGAGAAACTATGTTAGCATACTATGGTTTCGATGTAAATGCTATTAAATGGTTTGACAGTTATCTGCAACATAGAATGCAGTACGTGCAAATACACGCAGACGATGGTTCCAACTTATGTTCAACAATAGAGCCTGTAACTAGAGGTATTCCTCAGGGATCTTTGCTTGGGCCTTTATTATACATCCTCTATAGCGCCGATGTAGTTAACTTTATACTAGAGTGCAAATATCATATGTATGCAGATGATACACAGGTATACCATAGGAAACACCATCAGCCAGAACGGGAATACATATGTGATGTATGCTCGAAGCGTTTCTCAGCAGCTGGTAAACTTGCAAAGCACCTACGCACACACAGTGAGGACAAGTTTGTGCTTCGCTACGAGTGCCCAGTCTGTGCCCATATGTTCCACACTAAATATCATGTGCAGATGCATTTGTCTACACACCAGAGGGAAGGCCTAATAATGGAATCGAACCGTAATGAAGTATTAGCTATGGTGCTGCAGAATGCCCTCAAAATACCAAAACAACCAGACGCGGCGGCCACCCTGACGGAAATTACACCATCAGATGAAAGatacCGAATATGCAAGATATGCGGTGAAACATTCCATCATTTTTACTACTTAGAAGAACATCTCAAAAGCCACGGCTCCAAGATAGCCATAGACAACACTAACAAGACTGAAGAAAAGAAATACATCTGCGAAGTATGCAACAAGGCCTTCAAGCTTCATTACTATCTGAAGCTTCACAGCTTTACACATTCGAAGGAGAAACCTTTTATGTGTCAGCAGTGCGGTAAGGGATTCATCACTAAAGGCAAGTTGAAGAGACATTTAGAAACACATACCGGTTTAAAGAAATATCAATGTCATATATGTTATAAGTTTTTCACGAGACCAAGCTATTTGAGGATTCATATAAGAACTATTCATGGTACACAAGACTTTAATTTCAGGTTTGATAAGTCCAACTTAAAATTCAATGGAATTTCTGCCCTCAATCAAATTTCTAACGGACAGAGTAGTGTTTAG
- Protein Sequence
- MNQENVNMDPLSSYEYPAYDSYPLNTPQMYPYNVKLEDTLYYKHNNTNHSTYNNTCSQPPINQQELTKEDNIEEKKPVVSNTKKEKKSFCSEKINDTSFPFYGCSVCNISYMSLYELDQHVTIHKNRMTSYRLRLRNQYRKKQIKKEKKKLKKKKKIKEETDVEIEIKPEDGYIGNEKAVDYNNTVGNGSVENCENKNNDQNKNQEDVKNFENLNSNDENQKNNGESCSNNGENLNNNGEGCINNDESQKDNSENHNSNDESHKSCENEEELNNMEKIYKCFACQKQFTLSYYLKLHVRSHTDEKPYTCSVCGQSFITASKLGRHNKRIHLAARFQCRICFKIFSRFELLTNHFDKNHPEDKLEGEPYDYNAILPYLKELEEQLKEQSETKEQKTEDTWFDCDFAVQDSLKEETQDDSKEFAKIDVVLEDRINCEMDVEVKMEEEHYPGDDNIHGGDDEPVDDKHDDKAAIKEVVNKDDSFSDEDYFPANTWAATPKCDPSPPPSPKPKKKFKMSKCEICQKEISSASYMRVHMRTHTGEKPFKCYKCGRGFITSSKLNRHTLTHDVDVKTEGIKLEKDDIKSEGEEINDDDKPASSKITKKKKKLKKKLSKDLKGDDKVRRKRQKRPHACEYCNQRFLHLHMLEVHKKCHEGEELVLKCHYCLEEAIDADALKEHESTHSGPKPYLCTICGRNYKKRETMLAYYGFDVNAIKWFDSYLQHRMQYVQIHADDGSNLCSTIEPVTRGIPQGSLLGPLLYILYSADVVNFILECKYHMYADDTQVYHRKHHQPEREYICDVCSKRFSAAGKLAKHLRTHSEDKFVLRYECPVCAHMFHTKYHVQMHLSTHQREGLIMESNRNEVLAMVLQNALKIPKQPDAAATLTEITPSDERYRICKICGETFHHFYYLEEHLKSHGSKIAIDNTNKTEEKKYICEVCNKAFKLHYYLKLHSFTHSKEKPFMCQQCGKGFITKGKLKRHLETHTGLKKYQCHICYKFFTRPSYLRIHIRTIHGTQDFNFRFDKSNLKFNGISALNQISNGQSSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -