Basic Information

Insect: Lymantria dispar
Gene Symbol: -
Assembly: GCA_032191425.1
Location: CM063467.1:1903004-1917722[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1.3e-06 0.00015 23.4 3.6 1 23 274 296 274 296 0.98

2 10 1.1e-05 0.0013 20.4 0.7 1 23 302 324 302 324 0.97

3 10 2.8e-05 0.0033 19.2 1.2 1 23 330 353 330 353 0.98

4 10 6.2e-05 0.0074 18.1 1.4 1 23 358 380 358 380 0.98

5 10 7.3e-06 0.00087 21.0 1.5 3 23 388 408 386 408 0.98

6 10 6.6e-05 0.0079 18.0 0.4 1 23 414 436 414 436 0.99

7 10 2.2e-07 2.6e-05 25.8 1.1 1 23 442 464 442 464 0.98

8 10 4.6e-07 5.5e-05 24.8 3.5 2 23 471 492 470 492 0.97

9 10 1.6e-07 1.9e-05 26.2 3.6 1 23 498 520 498 520 0.99

10 10 0.00014 0.017 16.9 8.8 1 23 526 548 526 548 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1.3e-06	0.00015	23.4	3.6	1	23	274	296	274	296	0.98
2	10	1.1e-05	0.0013	20.4	0.7	1	23	302	324	302	324	0.97
3	10	2.8e-05	0.0033	19.2	1.2	1	23	330	353	330	353	0.98
4	10	6.2e-05	0.0074	18.1	1.4	1	23	358	380	358	380	0.98
5	10	7.3e-06	0.00087	21.0	1.5	3	23	388	408	386	408	0.98
6	10	6.6e-05	0.0079	18.0	0.4	1	23	414	436	414	436	0.99
7	10	2.2e-07	2.6e-05	25.8	1.1	1	23	442	464	442	464	0.98
8	10	4.6e-07	5.5e-05	24.8	3.5	2	23	471	492	470	492	0.97
9	10	1.6e-07	1.9e-05	26.2	3.6	1	23	498	520	498	520	0.99
10	10	0.00014	0.017	16.9	8.8	1	23	526	548	526	548	0.98

Sequence Information

Coding Sequence: ATGGAAACTTTATCAATGTGTAGAATTTGTTTGAACAAAGATGTCGATCAACATTCAACAATTGATACAAATCTTCAAGAATTATACGAGAAGCTAACTGCGACGCcaTTGAAACCGTTGTTATTGCAAAGTGTCAACACAATTAAGATAGTGCATCCAATTGTACATTTAAATTGTATAcctgtgcattcaaatgatccTGATGATGGCAATATTGGATGTTATGTTGCTGAAGTGGATCCCTTACAAATTAAGCCTGGTGATATACATGTGAAGGAGGAAATTATAGAAGGAGATAATATAATAGACCATGAAGCTAATATGGAATATACGGAATCAGATAATATTAACGCTGATGAAATTAAAGAAGAAGAAATTGAAACTTCAAGTTACAGCATCGATATTAAAGAAGAATTTGATATAGAAGAAGATATAATAACAGAAGATGGAGCCACAGAAAGAGAAGATGTACTAGCTATTAGAAATGTCGAAAATACAGAAGATGACTTAAGACAGAATCAAACATTGGCCTTAAATGAATTATCTGGAAACGTGTTTCACAAAACTATTAAAGTTATATTGAATAGAGTACATATGGACAGTATTAATACAAGTGATTCGACTGCTGGTAACCAAGAACTAAATGTGGTGGAACaagatatacaaaataatacagATGAAAGGCGTGAAAAAGGAGTAGaggaaaaatttgaaaaattagcAGAGGGTAGATGTGAAAAAGATAATGATATTTATGAAATACCCGCTCTCGAAGATAGATCTGATGATGAAATTGATACGTACACGATTGTAAAACCACATAGGTGTGATAAATGTGAGAAATATTTTAGTACTAAGAGCGAATTAAACAGGCATGTACGTGTACACACCGGTGAGAAACCATACAAGTGTGGATTATGTGACAAACGTTTTAGAGTAAGCGGTTCACTACAGAAACATTCGCTTGTACACAGTCCTGTTAAGCCATATAAATGTGATTTATGTGAGGAGTGTTTCCGTTCAAAGGGACCTTTAGATAAACACATCCGTGTACAACACAAGAAACAATTATACAGATGTAATATATGTAAGAAAGAATTCACCGCAAAGAACGGTTTAAAATTGCATTtccgtatacacaccggtgataAACCATTTGGATGTGATATTTGTGAGAGAAGTTTTAGACAGAAGACGCATTTAATTAATCATATAGATACACATACTAATGAAAATTTATATAGATGTGTGGTTTGTGAAAAAGGTTTTGGTACGAAGGGTGTATTTAAGAAACATATACGTATACATTTAAAGAAAAAACCTTATAATTGTAACGAGTGCGATAAAAGTTTTATTCAACGATCTCATTTAGCTGACCACGttcgtatacacaccggtgagagaGATCTTCAGTGTAGCATATGTGGTAAATGTTTCAATCGGAAGACAAATTTAAGCAGTCATTACCGTATCCATTTCGGTGATAAACCTTATAAATGCAGTGTATGTGAGACAAGTTTTAGTCGAAGGTCTCATTTGACTGGTCATATGCGCACTCATGACGGTGAAAAACCATTTAAATGTGATACATGTGGTAAATGTTTTAGACGGAAGGATCATTTGATTGGTCATTgtcgaacacacacaaaaaaataa
Protein Sequence: METLSMCRICLNKDVDQHSTIDTNLQELYEKLTATPLKPLLLQSVNTIKIVHPIVHLNCIPVHSNDPDDGNIGCYVAEVDPLQIKPGDIHVKEEIIEGDNIIDHEANMEYTESDNINADEIKEEEIETSSYSIDIKEEFDIEEDIITEDGATEREDVLAIRNVENTEDDLRQNQTLALNELSGNVFHKTIKVILNRVHMDSINTSDSTAGNQELNVVEQDIQNNTDERREKGVEEKFEKLAEGRCEKDNDIYEIPALEDRSDDEIDTYTIVKPHRCDKCEKYFSTKSELNRHVRVHTGEKPYKCGLCDKRFRVSGSLQKHSLVHSPVKPYKCDLCEECFRSKGPLDKHIRVQHKKQLYRCNICKKEFTAKNGLKLHFRIHTGDKPFGCDICERSFRQKTHLINHIDTHTNENLYRCVVCEKGFGTKGVFKKHIRIHLKKKPYNCNECDKSFIQRSHLADHVRIHTGERDLQCSICGKCFNRKTNLSSHYRIHFGDKPYKCSVCETSFSRRSHLTGHMRTHDGEKPFKCDTCGKCFRRKDHLIGHCRTHTKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -