Ldis017527.1
Basic Information
- Insect
- Lymantria dispar
- Gene Symbol
- -
- Assembly
- GCA_032191425.1
- Location
- CM063451.1:4246740-4252710[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0066 0.78 11.7 1.8 1 23 17 39 17 39 0.96 2 20 1.3 1.6e+02 4.5 1.8 1 23 60 82 60 82 0.93 3 20 0.00042 0.05 15.4 1.2 1 23 107 129 107 129 0.95 4 20 5.7 6.8e+02 2.4 0.3 6 23 138 156 136 156 0.93 5 20 0.00015 0.018 16.9 0.1 1 23 234 257 234 257 0.97 6 20 0.00033 0.039 15.8 0.3 1 23 263 285 263 285 0.94 7 20 0.0001 0.012 17.4 1.8 1 23 291 313 291 313 0.98 8 20 0.0005 0.059 15.2 1.6 1 23 319 341 319 341 0.98 9 20 4.8e-05 0.0058 18.4 4.5 1 23 347 369 347 369 0.99 10 20 2.6e-06 0.0003 22.4 0.7 1 23 375 398 375 398 0.95 11 20 3e-05 0.0036 19.0 0.5 1 23 404 427 404 427 0.96 12 20 3.4e-05 0.004 18.9 1.9 1 23 434 457 434 457 0.97 13 20 3.1 3.7e+02 3.3 8.0 2 19 464 481 463 484 0.74 14 20 0.00023 0.027 16.3 1.4 1 23 493 515 493 515 0.98 15 20 3 3.6e+02 3.3 1.7 3 20 520 537 519 539 0.92 16 20 0.82 98 5.1 1.0 2 23 543 564 543 564 0.77 17 20 7.5e-05 0.0089 17.8 0.9 1 23 569 592 569 592 0.97 18 20 1.3e-05 0.0015 20.2 3.9 1 23 597 619 597 620 0.96 19 20 0.015 1.8 10.5 0.8 2 21 625 644 624 645 0.93 20 20 0.00019 0.023 16.5 1.0 3 23 656 677 654 677 0.93
Sequence Information
- Coding Sequence
- ATGAAACCTATACAGGAATGCGAGatcaaaattgaaaaaatagaATTTCATAAGTGCAACCAATGTACAAGGGTGTTCTTAAATTTAGAAGATCTTACTAAACATGAAATGGAACATTATGAACTGCTTCAATCTCAAttGCAGTATTCATTTGTAAAATTAGAAAAGGTTAACATATATGAATGTTATGATTGTACAAGAGGATTTTTGTATAAAAaggattatttattacataaagtgaaacacatacatcaatttataaAAAATACAAAAGCTGAAAAATATAAGCTATATGAGAACAAAAACATTGAAAAGCCGTATAAGTGCCCTGAATGTGATTGCAGATTTGTTGCAAAGTCAACACTTGAGGTGCATTCTTTTGTGCACCAACCATTTCCACATATATGCTTCTGCGGTATCGGATTCTATAAAGAAAAAGATATGATAAGCCATAAAAAATTAGTTCACAACCAAAACAAAATTGAAGACACGAAACCtattactaataaaatatttgatataataaaaaaaccaaAGGAGACAATCAAAGTGAAATTTTTGTCGAAAAGGAAGaaggaagaaaaaaaatctagtaTAAATCACTCATTTTCTTTAGCGGACATCTTGACAAATGATAATTGGACACAATTACCAATAAAACCATTAAATGTAGAGTTTATAAAGACAAAAGATAAAAAGTACAAATGTcctatttgtaataaaatagtaaatagTAGGGCAAGCGTTGAAAAGCATTATCGTGCAGTGCATAGAAAAGAATGCCCATTTCTTTGTAAGCTATGTCCCAAGAAATTCACTCAAAAGGTCGCTCTAGGGGCACATTTAGTAAGACATTCTGGTGTTAAGTCATTTAAGTGTAGTTATTGTGACAAgactttttataatattgattcTCAATTACGTCACGAAAGGATTCATACTGATGAAAGGCCTTACAAGTGTTCATTTTGTGAGAAGAGTTTCAATGATCCAAGTGCTCATGCCCGTCATGAACGTATACATAAGGGTGATAAAAGATATCGTTGTGAACACTGTCCTCAAGCATTTACGGATCACAGTAGCCTCTATATACATAGAAAACGGCATATAAACAAAAGAGATTTTCCTTGTAAAAAGTGTGAAAAGAGATTTTATAGTAAATCAGATCTTGCTAAACATATTAATGCTGTACATTATCTTATAATGAATTATCAGTGcgattattgtaaaaaatattttgcttatAAGCCTAATTTACTGATACATATACAAGCTATGCATACTACTAACAGGAAGATGTTCAAATGTCACATTTGTTCTAAATATTTTGTAAGTCCACACAATGTTAATATTCATATTAATGTTGTCCATAATCGGATTAAGAAAACGAAATGCAAGTTTTGTCACAAACaattttttgccaaaaattTGTTGAAGCACCACAATTGCAGAAATCGAAGTGTCGAATCTATAAAATATGAATGCGATTATTGTTCAGCGATATTTCGTTTCAAGAGATCCCTTTATAAACACATAATTAAACATCTGAACATACTTTGTGAGTTGtgttcaaaatatttttcatgtagCAAAGATTTAGAAGAACATAAATTGAAAGCGAGTGAAAAATGTGAAATCTGTGATAAagaatttttttgtaaaaatgcaATTTTGATTCATCTGGATGTGCATAGAGGTGATAAATTTGAATGCAGTTATTGCCAAGCTATATTTGCCGATAAATCTAAATTATCTAATCACTTAAACAAATATCATAATGAACTGAAATATGTATGTGATCATTGCGGTGAAAGATTTTCATTCAAAAGTGATATAAAACTTCATATTAAAACGCATCATTTGGAAGTATTACGCTGTTATATTTGCTACAAAGGCTTCTATTCAAATTATGAGTAtagtaaacataaaaaaatcggttgtacTACAGCTAAAGGTAAACATTTATGTGAATTatgtgataaatattttaaaagtaagggTAGTTTGAAAGTACATGTAGAAagtatacataaaatacatcAGGCGGGCTATAGagatcaaggaatcggtatcaATGGCCAGCTTATTGGTGAAGGGGAGGTGATATAG
- Protein Sequence
- MKPIQECEIKIEKIEFHKCNQCTRVFLNLEDLTKHEMEHYELLQSQLQYSFVKLEKVNIYECYDCTRGFLYKKDYLLHKVKHIHQFIKNTKAEKYKLYENKNIEKPYKCPECDCRFVAKSTLEVHSFVHQPFPHICFCGIGFYKEKDMISHKKLVHNQNKIEDTKPITNKIFDIIKKPKETIKVKFLSKRKKEEKKSSINHSFSLADILTNDNWTQLPIKPLNVEFIKTKDKKYKCPICNKIVNSRASVEKHYRAVHRKECPFLCKLCPKKFTQKVALGAHLVRHSGVKSFKCSYCDKTFYNIDSQLRHERIHTDERPYKCSFCEKSFNDPSAHARHERIHKGDKRYRCEHCPQAFTDHSSLYIHRKRHINKRDFPCKKCEKRFYSKSDLAKHINAVHYLIMNYQCDYCKKYFAYKPNLLIHIQAMHTTNRKMFKCHICSKYFVSPHNVNIHINVVHNRIKKTKCKFCHKQFFAKNLLKHHNCRNRSVESIKYECDYCSAIFRFKRSLYKHIIKHLNILCELCSKYFSCSKDLEEHKLKASEKCEICDKEFFCKNAILIHLDVHRGDKFECSYCQAIFADKSKLSNHLNKYHNELKYVCDHCGERFSFKSDIKLHIKTHHLEVLRCYICYKGFYSNYEYSKHKKIGCTTAKGKHLCELCDKYFKSKGSLKVHVESIHKIHQAGYRDQGIGINGQLIGEGEVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -