Basic Information

Insect: Lymantria dispar
Gene Symbol: -
Assembly: GCA_032191425.1
Location: CM063456.1:3298713-3322157[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 9.3e-07 0.00011 23.8 1.9 1 23 290 312 290 312 0.98

2 12 1.8e-07 2.2e-05 26.0 0.4 1 23 318 340 318 340 0.99

3 12 6.5e-06 0.00078 21.1 4.9 1 23 346 368 346 368 0.98

4 12 3.2 3.8e+02 3.2 0.5 12 23 374 385 373 385 0.91

5 12 7.4e-06 0.00088 21.0 7.0 1 23 391 413 391 413 0.98

6 12 4.2e-07 5e-05 24.9 1.0 1 23 419 441 419 441 0.98

7 12 5.5e-05 0.0066 18.2 0.4 3 23 449 469 447 469 0.97

8 12 1.4e-05 0.0017 20.1 1.6 1 23 475 497 475 497 0.99

9 12 2.9e-05 0.0034 19.1 0.7 1 23 503 525 503 525 0.99

10 12 7.7e-06 0.00092 20.9 0.7 1 23 531 553 531 553 0.98

11 12 3.6e-06 0.00043 22.0 0.9 1 23 559 581 559 581 0.98

12 12 0.38 46 6.1 0.3 3 23 589 610 587 610 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	9.3e-07	0.00011	23.8	1.9	1	23	290	312	290	312	0.98
2	12	1.8e-07	2.2e-05	26.0	0.4	1	23	318	340	318	340	0.99
3	12	6.5e-06	0.00078	21.1	4.9	1	23	346	368	346	368	0.98
4	12	3.2	3.8e+02	3.2	0.5	12	23	374	385	373	385	0.91
5	12	7.4e-06	0.00088	21.0	7.0	1	23	391	413	391	413	0.98
6	12	4.2e-07	5e-05	24.9	1.0	1	23	419	441	419	441	0.98
7	12	5.5e-05	0.0066	18.2	0.4	3	23	449	469	447	469	0.97
8	12	1.4e-05	0.0017	20.1	1.6	1	23	475	497	475	497	0.99
9	12	2.9e-05	0.0034	19.1	0.7	1	23	503	525	503	525	0.99
10	12	7.7e-06	0.00092	20.9	0.7	1	23	531	553	531	553	0.98
11	12	3.6e-06	0.00043	22.0	0.9	1	23	559	581	559	581	0.98
12	12	0.38	46	6.1	0.3	3	23	589	610	587	610	0.87

Sequence Information

Coding Sequence: ATGGATAAGTTATCGATGTGTAGAATATGTCTAGTTAAAGACGTTAAAATGAATTCCTTGTTCAGTGCTGAGCTGCAGGAATTGTATGAGAGGCTGACGAGGACGCCATTTGAGACAAAAGATAAGAAACCGGTACAAGTGTGTTACTTATGCTGTGCAAGACTTCAGAACTGTCATCGTCTGCAGGCTACATGCCTTAAAAGTGAAgagtttttcaataaaattgtaGCAGATAGTGAGTTAATTGAAATTGAGTTACAAGATTTGAACACACTCAAAACAGTACACCCATTAATACTTATAAGTTGTGAGCCATTAACTAGAAAGGACACTGAAGATGATAAAATAGATGAAGACaatgattttaaatttgaacctTTAGAAATTCCATCtgatgttcaaataaaacatgaaCTCGTTGAAGATGACTCATTTTCAAATGTGGCAGCTGATATTAAATTAGAGGGTACTGTTACAAATGAGGGTATTTGTATAGAGCATGGTGACATATTAGATAATAGCCACACAATGGAGGATACAGAATTAAAACATGATATATCTCTAAAAATCGAAAAGATTGTTCCAGAGAGAATAAACTTGGAACACTTTAAAATAGATGATTCGTTTACTAATGAGGAAGTTCATATCAAATCAGAGGTTACTGTTAAAGAAGAGGATATTACAGAAGATAGTGTCATGTCTGATAATAGACACACAATGCAGAATACAGCATTAGAACATGATATACATCTAAAACCTGTCAAAATTGTTTTCAAGAGAATAGATTCGGAAGAGTTTGAAACAGatCTAATTGCAGCTAAGAAGCCAAAACTACCGGATGGAAATACTGACGCTGGTGAAAAACCATATATGTGTAAAATATGTGAAAAAAGCTACGCACGGAAGAAACAATTGATTCAACATACACGAACGCACACTGGTGATAaaccatatgtatgtaacatttgtgagaaaagtttcattcGGAAGACTCAATTGGTGGATCACATACGTATGcacaccggtgagagaccacacagatgtaacatatgtgagaaaagATTTGTTAACGAGAGCCACTTACGTAGACATAGCCGCATACACACTGGTGATAaaccatatAAGAGTCATTTAGCGACTCACAcgcgtatacacaccggtgagagaccacacaaatgtaacatatgtgagaaaagtttcattcaTAAGAGTCATTATGTGAGTCACAtgcgtatacacaccggtgaaaaACCGTACAGATGTAACGTATGTGAACAAAGTTTTACTACGAACAGTGCGTTACAAAGACATAGCCGAATACACGCGAGTGAAAAACCATATGGGTGTAATGTATGTGAGAAAAAATTTATTACAGAGAGCGATTTAAGTAAACATAGCCGTGTACACACTGGTGAGAGACCGTATAAATGTGACATGTGCGAGAGAAATTTCACTCAGAAGTCGAGATTAATCATTCATAGACTTACACATACTGATGAAGGACCGTATAGATGTAACACATGTGGGCAAATTTTTGCTCAGAAAGAGAGATTAGTGATTCATACACGTAAACATACGGGTGAGAGACCGTATAGATGTAACGTATGTGGACACAGTTTTGTTGAAAAGAGAGATTTGACTGCACATGGCCGTATACACAGTGATGTAAAACCATATAAGTGTAATATATGTGAGAAGAGTTTTTATAAGAAAAGCGCTTTAGTGAGTCACACTCTTGTACATACCGGTGAGAGACCCTATGGATGTAATGTATGCGAGAAAAGTTTCGCTTGGAAAGATAGTTTAGTATTTCATATGTTTAGTAGTCATTCTGCTCAGACGCCGTATAGGAGTGACAATATGTGA
Protein Sequence: MDKLSMCRICLVKDVKMNSLFSAELQELYERLTRTPFETKDKKPVQVCYLCCARLQNCHRLQATCLKSEEFFNKIVADSELIEIELQDLNTLKTVHPLILISCEPLTRKDTEDDKIDEDNDFKFEPLEIPSDVQIKHELVEDDSFSNVAADIKLEGTVTNEGICIEHGDILDNSHTMEDTELKHDISLKIEKIVPERINLEHFKIDDSFTNEEVHIKSEVTVKEEDITEDSVMSDNRHTMQNTALEHDIHLKPVKIVFKRIDSEEFETDLIAAKKPKLPDGNTDAGEKPYMCKICEKSYARKKQLIQHTRTHTGDKPYVCNICEKSFIRKTQLVDHIRMHTGERPHRCNICEKRFVNESHLRRHSRIHTGDKPYKSHLATHTRIHTGERPHKCNICEKSFIHKSHYVSHMRIHTGEKPYRCNVCEQSFTTNSALQRHSRIHASEKPYGCNVCEKKFITESDLSKHSRVHTGERPYKCDMCERNFTQKSRLIIHRLTHTDEGPYRCNTCGQIFAQKERLVIHTRKHTGERPYRCNVCGHSFVEKRDLTAHGRIHSDVKPYKCNICEKSFYKKSALVSHTLVHTGERPYGCNVCEKSFAWKDSLVFHMFSSHSAQTPYRSDNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00931732;
90% Identity: iTF_00931732;
80% Identity: iTF_00931732;