Basic Information

Insect: Lymantria dispar
Gene Symbol: -
Assembly: GCA_032191425.1
Location: CM063467.1:13885561-13897914[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 3.5e-05 0.0042 18.8 5.5 1 23 395 417 395 417 0.99

2 13 5.9e-06 0.00071 21.3 0.3 1 23 423 445 423 445 0.98

3 13 5.6e-07 6.7e-05 24.5 5.1 1 23 451 473 451 473 0.99

4 13 3.8e-06 0.00046 21.9 1.6 1 23 479 501 479 501 0.99

5 13 0.0011 0.13 14.1 2.9 1 23 507 529 507 529 0.98

6 13 1.5e-05 0.0018 20.0 6.9 1 23 535 557 535 557 0.98

7 13 5.1e-08 6.1e-06 27.8 4.0 1 23 563 585 563 585 0.99

8 13 2.2e-05 0.0026 19.5 4.8 1 23 591 613 591 613 0.99

9 13 0.00016 0.02 16.7 2.3 1 23 619 641 619 641 0.98

10 13 0.00037 0.044 15.6 1.5 1 23 647 669 647 669 0.98

11 13 9.6e-05 0.011 17.5 2.3 1 23 675 697 675 697 0.98

12 13 1.2e-06 0.00014 23.4 4.9 1 23 703 725 703 725 0.98

13 13 6.2e-05 0.0074 18.1 6.4 1 23 731 754 731 754 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	3.5e-05	0.0042	18.8	5.5	1	23	395	417	395	417	0.99
2	13	5.9e-06	0.00071	21.3	0.3	1	23	423	445	423	445	0.98
3	13	5.6e-07	6.7e-05	24.5	5.1	1	23	451	473	451	473	0.99
4	13	3.8e-06	0.00046	21.9	1.6	1	23	479	501	479	501	0.99
5	13	0.0011	0.13	14.1	2.9	1	23	507	529	507	529	0.98
6	13	1.5e-05	0.0018	20.0	6.9	1	23	535	557	535	557	0.98
7	13	5.1e-08	6.1e-06	27.8	4.0	1	23	563	585	563	585	0.99
8	13	2.2e-05	0.0026	19.5	4.8	1	23	591	613	591	613	0.99
9	13	0.00016	0.02	16.7	2.3	1	23	619	641	619	641	0.98
10	13	0.00037	0.044	15.6	1.5	1	23	647	669	647	669	0.98
11	13	9.6e-05	0.011	17.5	2.3	1	23	675	697	675	697	0.98
12	13	1.2e-06	0.00014	23.4	4.9	1	23	703	725	703	725	0.98
13	13	6.2e-05	0.0074	18.1	6.4	1	23	731	754	731	754	0.98

Sequence Information

Coding Sequence: ATGAAACCAACGCAATCACAAGATGAGAACGCGCTTAGAATAGACCACACAGTAATAAATTTGAACTACGCACCTGCACTTGCAAAAGACCATGACAATGAAGCCCAATCTTATGACAGCGCACCAATTCATGACGCTCGAGTTCATGATGACGGCCAAACTTCCAAAGTTACTGAAATTCATAAGGATGTTGCTCAAGTTCATGAAGACGGTCAAAGTCCTAAGGATACTGAAACGCGTGACGATGACGGTCAAATTCCTAAAGCTACAGAAACTCCTGACGATGCCGCTCAACTTCATGATGACAGCCAAATTCCTAAAGTTACTGAAATTCATGACAATGCCGCTCAACTTCATGATGACGACCAAATTCATGAAGTTGCTGAAATTCAGGACGACGTCGCTCAAGCTCATGATGATGGCCAAATTTCTAAAGTTACTGAAATTAATGACGATGCCGCTCAAGTTCATGATGACGCCCAAATTCATGAGGTTGCTAAAATTCAGGACGACGTCGCTCAAGTTCAAGATGACGGCCAAATTCCTAAAGTTACTGAAATTCATGACGATGCCGCTCAAGTTCATAACGACGGCCAAATTACTGAAGTTGCTCAAATTCATGACGATGCAACTCGATCTCGTAACGATGGTCATTTTCATGGTATTGTTCAAATTTATGATGATCTTCAAATGAATGACGCTAGTCTAGACGACGTGAATGATGGTTCGCCAACTGATGATTCCGAAGACAGTGTGTCTGTTATACAAATGACTTGTGATGTAGAAGTTAAAGTGGAAAACGTTGAAGttacagatgataatatacagCAAGAAGTGGCTAACAATGATGGTAACGGAGAAACCAGTGATGAATTAAATTCCAATAGAAGTAATAAACATACAACTCTCAATGTGCCCAATTCAGCAAGTAATATACCTCTTAAATCTTGTAAAATTGTATTGGATAGAATTGATTTGAGCCGAATACAAACAATTGggAATCCAGCCACCGAGGATGCAAAACGAGCATTGAAAGAGAAAAAGCAAAAAACATCTAGCAATACTGTAAttttagaaaacaaaaatattgctCGTGAAAGTCAGAGTAGATACAAATGTTTGACGAAGAGTGAACCTATTGACGTTTCAGTTGATTTCGTTAAATGCAAGACTgaaaaaacatttaaatgtgACTTATGTGAGAAATATTTTAGTACCAATTATCATTTATTCATTCACAAGCGGACACACACTGGTGAAAAGCCATACAAATGTGATGTATGTGATAAAAGTTTTATTGTAAGTAGTAAGTTAATTATACACAATCGTATACATACCGGTGAGAAGCCGTACAAATGTGATATATGTGGCAAATATTTTAGACAAAAGCATAATTTAAAAACGCATAAACGTATACACGATAATATAAGACCATATAAATGTATGTTATGTGATAAAAGGTTTACACAGAAGCAAGTTTTGACCGATCACATGCGTGTACACACCGGCGAGAAACCTTTCAAATGTGATATATGTATGAAATGTTttagtataaaacaaaatttgaatattCATAGAAGTATTCACACCGGTGAGAAACCGCATAAGTGTGATATGTGTGAGAAATGTTTTAGCAATAGTCGTGATTTAATAAAACATAGGCGTAAACACACGGGTGATAAACCATATAAATGTGATACATGTGGTACATGTTTCAGTCAACAATCTACTTTAAAAAATCACATGCGTGTACACACACACGAGAAACCATATAGATGTAAGATATGTGAGAAATGTTTTAGTCTGAAACAAAATTTGGATCAGCACTTGCGTAAACACACGGGTGAAAAACCTTATAAGTGTGTTACATGCAATAAGAGTTTTAGTCAAATGCAATATTTACGGATTCATAATCGTTTGCACACTGGTGATAAGCCATATAGTTGTGATGTGTGTGAGAAACGTTTTAGTGCTAAGTGTTCTTTATTATCACACGCTCGTGTACACACGGGTGAAAAACCTCACGTATGCCCCATATGTGAAATGTGTTTTACAATAAAACAAAGTTTAAACGATCACGTGCGTACACACACCGGTATAAAACCATTTAAATGTGATACATGCGACAAGTGTTTTAGCCAAAAGCAAAATTTACGCACACACGAACGTGTACACACGGGCGAGAAACCGCATAAGTGTAAAGTATGTAAGAGGCGTTTTAGACAAAAGTTTACACTATTGAGACACGTCCGTACACAACATATGTGA
Protein Sequence: MKPTQSQDENALRIDHTVINLNYAPALAKDHDNEAQSYDSAPIHDARVHDDGQTSKVTEIHKDVAQVHEDGQSPKDTETRDDDGQIPKATETPDDAAQLHDDSQIPKVTEIHDNAAQLHDDDQIHEVAEIQDDVAQAHDDGQISKVTEINDDAAQVHDDAQIHEVAKIQDDVAQVQDDGQIPKVTEIHDDAAQVHNDGQITEVAQIHDDATRSRNDGHFHGIVQIYDDLQMNDASLDDVNDGSPTDDSEDSVSVIQMTCDVEVKVENVEVTDDNIQQEVANNDGNGETSDELNSNRSNKHTTLNVPNSASNIPLKSCKIVLDRIDLSRIQTIGNPATEDAKRALKEKKQKTSSNTVILENKNIARESQSRYKCLTKSEPIDVSVDFVKCKTEKTFKCDLCEKYFSTNYHLFIHKRTHTGEKPYKCDVCDKSFIVSSKLIIHNRIHTGEKPYKCDICGKYFRQKHNLKTHKRIHDNIRPYKCMLCDKRFTQKQVLTDHMRVHTGEKPFKCDICMKCFSIKQNLNIHRSIHTGEKPHKCDMCEKCFSNSRDLIKHRRKHTGDKPYKCDTCGTCFSQQSTLKNHMRVHTHEKPYRCKICEKCFSLKQNLDQHLRKHTGEKPYKCVTCNKSFSQMQYLRIHNRLHTGDKPYSCDVCEKRFSAKCSLLSHARVHTGEKPHVCPICEMCFTIKQSLNDHVRTHTGIKPFKCDTCDKCFSQKQNLRTHERVHTGEKPHKCKVCKRRFRQKFTLLRHVRTQHM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -