Ldis030747.1
Basic Information
- Insect
- Lymantria dispar
- Gene Symbol
- -
- Assembly
- GCA_032191425.1
- Location
- CM063459.1:21968644-21969237[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.5e-07 0.00015 22.8 0.0 9 42 22 56 15 58 0.85
Sequence Information
- Coding Sequence
- ATGCCTCggaaatatataagaaaaaaagaacAATCATACACTATCGAATCCTTACAAAAAGATGtgcaagaaataaaaaatcagaAGTTAACTTTTCGTCAGGCGGAAGAAAAATATGGTATTCCCAGAGCTACTTTATTTGACCAAGTGAAAAAAGGCAATATTTCTACAATACCAAAGAGAGGTAAAAAATCTGTTTTTAACGAAATACAAGAAAACGAACtggttgattttattttaaagtcatGTAAGGTTTTCTTTGGGATAACAATACCTACTCTGAGAAAAATAGCTTTCGACTTTGCCACCGCAAACAACATAAAACATAATTTCAATGAAGAAGCTGGTATGGCAGGAATGGATTGGTATCACAATTTTTTAGCTAGACATCCAAATATATCACTTCGAAAGCCAGAAGCTACTTCTATAAATAGAATTACAGCATTTAATGAAGAAGaaaccgatattttttttgtaaatctgAAAGCTGTCATGACTAAATACCAATTTAAATCTGATTCAATTTACAATATTGATGAAACTGGGATTAGTACAGTACAACGCAATTCAGGATTCTTGCACCAAAGGGACTAA
- Protein Sequence
- MPRKYIRKKEQSYTIESLQKDVQEIKNQKLTFRQAEEKYGIPRATLFDQVKKGNISTIPKRGKKSVFNEIQENELVDFILKSCKVFFGITIPTLRKIAFDFATANNIKHNFNEEAGMAGMDWYHNFLARHPNISLRKPEATSINRITAFNEEETDIFFVNLKAVMTKYQFKSDSIYNIDETGISTVQRNSGFLHQRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00932436;
- 90% Identity
- iTF_00931188;
- 80% Identity
- -