Ldis003788.1
Basic Information
- Insect
- Lymantria dispar
- Gene Symbol
- -
- Assembly
- GCA_032191425.1
- Location
- CM063442.1:12104628-12105131[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.4e-11 3.2e-08 34.5 0.0 1 38 18 55 18 59 0.94
Sequence Information
- Coding Sequence
- atgcCTCGAGTCAGCCTACTCTCTCCATCTTCGAAAAAAAGGAAAACGTGGGATCCTGATCAAATGAAGAAAGCAATCGAAGCTGTAAGGACAAAGGTCATGGGCTATAAAAAGGCTGTAAAAACGTTTTCTGTACCAAGATCCACATTGAAACGATTGGTGAAGGACTCACAAGAATGTTTAGAGTTACTGGTGCATAAACCGCTTGGTAGAAAACCCGTGCTTCCACTTCACCTGGAAAAGAGGTTAGTGGAGTATCTTTTGTATATGGAATCTATATACTACGGATTTACTAGAATGGATGCTAGAAAAATGGCCTATCAGTTGGCTATCAAAAATAAGATCgcaaatcaatttaaaaatgaaGTAGCAGGACGTGCTTGGATGGACCATTTTCTGAAGCGACATAAAGACAGCTTGTCCCTACGCAGACCTATGGGGACTTCGTATGCTCGCGCTCAAGGCTTTAACCGTGAAGcagttaaagaattttttgactACTAA
- Protein Sequence
- MPRVSLLSPSSKKRKTWDPDQMKKAIEAVRTKVMGYKKAVKTFSVPRSTLKRLVKDSQECLELLVHKPLGRKPVLPLHLEKRLVEYLLYMESIYYGFTRMDARKMAYQLAIKNKIANQFKNEVAGRAWMDHFLKRHKDSLSLRRPMGTSYARAQGFNREAVKEFFDY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00000249;
- 90% Identity
- iTF_00931178; iTF_00931242; iTF_00931190; iTF_00000249; iTF_00711777; iTF_00122319;
- 80% Identity
- -