Basic Information

Gene Symbol
pol_1
Assembly
GCA_032191425.1
Location
CM063440.1:8053380-8091819[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 7.4e-19 3.6e-15 57.5 0.0 6 89 1061 1141 1056 1141 0.92

Sequence Information

Coding Sequence
ATGCCCTTCGGATTAAAAAATGCACCTTCTACATTTCAGAGAATGATGAATTTAGTTCTTTCTGGCTTACAAGGGTTACATTGCTACGTATACCTTGATGACTGTATTATATACTCTCATGACCTTGAAtctcatataaataaattagaaactGTATTCTCAAAATTTAGAGAAGCAAATCTAAAGTTGCAACCTGACAAATGTGAGTTTTTACGAAAAGAGGTTGTTTACCTAGGGCATATCATTACAGATAACGGTGTATCGCCCAATCCAGATAAGGTCAAGGCTATTTCCCAATTCTCAACACCGAAAACTCCAAAAGATGTTAAATCCTTCTTAGGACTAACAGGTTACTATCGTCGTTTTATACAGAACTTTTCACATATAACAAAGCCTCTTACATCACTATTAAAAAAGGACGTAGATTTTCATTGGCACTCTGAACAAGAGCATGCCTTCAATATGCTTAAAGAAAAGCTTATTTCAGCTCCCTTACTACAGTATCCCGATTTTTCTAGACCGTTTATTGTAACAACAGATTCTTCAAATTATGCCGTAGGCGCAATTCTGTCCCAAGGTGAAGTTGGCAAAGATAAGCCAATTGCATATTCCTCACGAACCTTAAATAAACACGAAGGAAATTATTCAACAACCGAGAACGAACTTCTTGCTATCATTTTTGCTGTTAATACATTCAGGCCCTATCTTTATGGTTATAAATTTAAGATTGTCACAGACCACAGGCCTCTAACCTGGTTATTTAATGCTAAAGATATGGGTGGACGTCTCTTAAGATGGCGTTTAAAGCTCGAAGAATATAGTTACGAGATTATCTATAAACCGGGAAGAGTAAATAGCAATGCTGATGCATTATCCCGTTATCCGGTAAATGCTGTAACTACTAGAAGTTCTAGATTGAATTCAACTACTTATGAACAAtactttaaaatacaatttacaaaaaataacctTGATTACGATACGAAAATTATAGAGCATAATCAAAGTTTGCATACTTCAAAACAAAAGAGTATTGCTTGTCCAGTTTCCTTAGACTTAGATTATTCAATGCCGCATTGTGAACAATTATTGGCAATGCTTGAAGACTCTGAAGAGTTTCGCGCCAattcaCATTCGCATTTCCAACCAATAGTTCTAGTACAAAGACTACCCGAATCCAACAATTCAAATTTACACTTGAACGGCGTACGTGTTAATGGCCAATCTACGAATGATAGTTTAACGCCTATTGTAAGGCATAGAGTTAATAAACCACCAAGATCAAAaccggacaaaaaaaaattgaaccaAAGAGTTCATGTAATGCAATTAAGATCACGCACCCGCACAAGGAGAACCAGACCAAGTACATCCAGACGTTCAACAGTTCGTACAAGAGCAAAAGCTTCAACAAGAAGTTCATCTAGTAGTAGCTCCTCTAAAGCTGTTATTAACACTAGAATGTCATTGCGAAGAAAGCATGGAAGTGAAACTATTGAATGCCCTAAGCCATCGCCGCCGAAAAGGAAACGTGTACCAACTACATATTCACAGCCATCAACAGACTTCTCCTTGGACGATAATCGACCTTTAACATATTTCGCTAGTCCTGATCGCCTACCACAAACATCTTTACCTAAGTCAAAAAAACGATTCGTTCGGTTGGTCCAAAATATTCCTGATGTGATCGAAGGATCATCATCTAAAAGTCCTATAGCCGACGCTGTCATGCAAATAAGTGATTCACCTTCAGGTGATACACATTCGAGTAATGAGCAGGTTCCTGCATCAAATAAGAGAGATAAGACTAATAAGCACTGCGTAAATATAGTGACTGTTGCAGACATACAGCAAACATCAAATAGCTCTTTGACCGAGACTGGTGCCATACCAAAAGTTAATACACCGTTAGCACAAAGACGTCCGAATAGTGAGCAATTACCTGTCTTGAATGAGAAACCTAAGGCTAATAATGCACGCGGTACAGATATAATGCCGGAAGTGTTTTACAAACCGACATCATGTATAAGCCCTACGGCTGAAACAGTCGTCATACCAAGACTTGATTCACTAACAGGTCCACTTGACTTTGGAACCAATATATCATTGTCAGCATCTGAAGCTATAAACACAAGACCAGCCCAGAATGGCATTCCAAAAGTAGTCAACTATTACAGCGAACAGGGTATCCATCGCTGGATGGACGGGTCTTTAGCACGTAAaacaatatcatcatcgcaggacCGCAAATCTGATGTTTTGTCTGAAACAATTgttattgatgatgatgaagtcaaaCAAGAATATGAGGATACCTTCGAATGTTCAGCTGTTACATGGCGTACAGTGAATGATGTAATTAACCTGTCAAGAGCAAATTACGAATTGAGATGTCGCGAATGCATACATTGCGTAAGAAttcaaaaatatgaaaaattttgttctatattaaaaaataaatataacatcaatgATAATGTTAATTGGGCAGAGGCTGAAGCGACTAATTGGAATCCAATATGTATGCAAAGTGAGATTTATGTGATAAAAGAAAATGGTATTGGTGCAACCACAGAGAAGGGAGATGTAACCCTGTTTATGGATTTAATACCACGACATGCTCAAGTAATGATCAAATGTGTTATACATATGGCCAATGGTCAACATAGCCTCTATTCATATGTTATTCCCAGGTCTAACGCCCAAGTAAGCGCTGAATTCTCATTTATAGAACACGAATTCATTATTGATAAATTGATCGACGGACTAACACAGGATACTAGGATGTACCGTTCACAGGCATCATGTGATGATATTGAAGTTAACGGTGAAACTACTATGGTATCTCAAATCGAACCGATAGCTGGACCATCTGGTATACAAAATGGGAATGATATATCAAATGTAAATAGTGGTTTTGATGACGATACTGATTCAAATATAAATGATGAAGGCAGAATATTAAATGCACCTACGTATTATCCGACGCCTGAGGAATTCGCCgAACCAATGGTTTATTTAGAACACATTATGCAACAAGCGTCGGAATTTGGCATCTGCAAGATTGTACCACCGAATGGTTTTGCCCCGACGTGTAAAATAGAAGATGATATCAAGTTTCAAGTTTCGAATCAGTACATATCACGACTTTACAATAGGTGGGGACCATCGGCCAGGGAGATGTGCGCCATAAAAACATGCCTAAAGGATCAGAATGTTAACATTTCTAAACCAGCCATGattgatGGTATTGAAGTAAATTTACCGAAATTATATCATCTGGTACAAAGATATGGTGGTcttgaaaatgtaataaataaaaatagatggGGCAAAGTGGTGGATGACATGAATCTTAACAAGGGCCCGTCAACTGAGAGGAAACTGGATCAAATATATATGACTTTCCTTTTACCATATGATACTTTAACAACCACCGAACGTCAGGATTTATTACTGAGAGTAGAGAAAGCCTGGAATAAGAGGAATAATAAAATGTTGGAGCATGCTAATAATCCATTGCACCGCTACAAACGTTTGCTTGGCGAATCTGACACATCCTCTGACGAAAGTGACGATGATCCTACGAAAGATGCTGAAGACTGCGTCGAGCCAGGACAGAACATGGTCTTGGGTAAATTTAAAAGGGTTGCGAGGAACGCTCAACATCAGTTCTTTCGCAATAAAGCCGCCCATTCTGCCCAAGTTGAGAATAAATATTGGCACATGGTCATCTTAGGCACTGAGCATATATGCGTGAATACAGCTTCCATTGACACTGGGGAACAAGGCCTTGGATTCTCCACTACCCGTAACGATGGTTACAACCGACATAAATGGAACCTGAAGATGCTGAGCGAAAACAAAGCGAATGTGTTGAGAGCGCTCGGTCCTGTACTTGGAGTGACCGTACCAACTTTACATCTTGGCATGATGTTCTCCACCAGCTGTTGGCATCGAGACCCACATGCTGTACCATGGATAGAGTACTCTCACATGGGCCCTGCCAAATTGTGGTACAGCGTACCAGAGAAAGAAGATGAAAATTTCCGCGCCGCTTCAAAAACTTTAAATCCGACATCTTGCCAAAATAAAGATTTGTGGCTATCATCTGATATTTCAATGATTCCACCGAATTTCCTGCGCGAACACAATGTGAAAGTGTACCGCGTGGAGCAGAACCCCGGTGAATACGTCCTAGTGATGCCCAGGGCTTACTCGTGCTCCATTAGCACTGGATTCACAGTTTCAGAAAGTGTTTACTTTGCAACTGAGCGTCTATTAAATGGCCTTATTAATGCATTTCAAGAGATTCGCAAATCATGCGAGCCTGCAATGTTCGCTCTGGAACAGTTGTTGAAGGCAATCGTCGATGATAAAGTTGATTCCCCCTCACTTATAAAGAAGATACAACCAGTTTTAAGGAAAATAGTTATGGAAGAGTTAGAAAATAGAAGAAAATTGGAACTTGCcggtataaaaataataccacCGATGCGAGAGGGTGAAACTGTAACATCAAAGGGAAAGAGAGGCAAAAATGCAACACCCAGACCTCCAGTGTGGAATATTAGAGAACAAGATGAATGCGAAATATGCCGTCGTATTCTCTTCTTATCCAAGgtAAAGAATATACGTCAGGGATCAGTCTTATGTCTAGAACACACGCTCAGACTGATGAGGAACAAAAAGATGTTATATCCTGTTGATCTTGAGATGCATTGTATGTTCGATAACGATAATTTGAAGATTCTTATCATTAAGCTCGAACAGAGGGCCGCCGTAGACGGCATTCAGACAATTGGTGAATCTGAAAGTTCTCTATATTTAAATCAATATGACTCCTAA
Protein Sequence
MPFGLKNAPSTFQRMMNLVLSGLQGLHCYVYLDDCIIYSHDLESHINKLETVFSKFREANLKLQPDKCEFLRKEVVYLGHIITDNGVSPNPDKVKAISQFSTPKTPKDVKSFLGLTGYYRRFIQNFSHITKPLTSLLKKDVDFHWHSEQEHAFNMLKEKLISAPLLQYPDFSRPFIVTTDSSNYAVGAILSQGEVGKDKPIAYSSRTLNKHEGNYSTTENELLAIIFAVNTFRPYLYGYKFKIVTDHRPLTWLFNAKDMGGRLLRWRLKLEEYSYEIIYKPGRVNSNADALSRYPVNAVTTRSSRLNSTTYEQYFKIQFTKNNLDYDTKIIEHNQSLHTSKQKSIACPVSLDLDYSMPHCEQLLAMLEDSEEFRANSHSHFQPIVLVQRLPESNNSNLHLNGVRVNGQSTNDSLTPIVRHRVNKPPRSKPDKKKLNQRVHVMQLRSRTRTRRTRPSTSRRSTVRTRAKASTRSSSSSSSSKAVINTRMSLRRKHGSETIECPKPSPPKRKRVPTTYSQPSTDFSLDDNRPLTYFASPDRLPQTSLPKSKKRFVRLVQNIPDVIEGSSSKSPIADAVMQISDSPSGDTHSSNEQVPASNKRDKTNKHCVNIVTVADIQQTSNSSLTETGAIPKVNTPLAQRRPNSEQLPVLNEKPKANNARGTDIMPEVFYKPTSCISPTAETVVIPRLDSLTGPLDFGTNISLSASEAINTRPAQNGIPKVVNYYSEQGIHRWMDGSLARKTISSSQDRKSDVLSETIVIDDDEVKQEYEDTFECSAVTWRTVNDVINLSRANYELRCRECIHCVRIQKYEKFCSILKNKYNINDNVNWAEAEATNWNPICMQSEIYVIKENGIGATTEKGDVTLFMDLIPRHAQVMIKCVIHMANGQHSLYSYVIPRSNAQVSAEFSFIEHEFIIDKLIDGLTQDTRMYRSQASCDDIEVNGETTMVSQIEPIAGPSGIQNGNDISNVNSGFDDDTDSNINDEGRILNAPTYYPTPEEFAEPMVYLEHIMQQASEFGICKIVPPNGFAPTCKIEDDIKFQVSNQYISRLYNRWGPSAREMCAIKTCLKDQNVNISKPAMIDGIEVNLPKLYHLVQRYGGLENVINKNRWGKVVDDMNLNKGPSTERKLDQIYMTFLLPYDTLTTTERQDLLLRVEKAWNKRNNKMLEHANNPLHRYKRLLGESDTSSDESDDDPTKDAEDCVEPGQNMVLGKFKRVARNAQHQFFRNKAAHSAQVENKYWHMVILGTEHICVNTASIDTGEQGLGFSTTRNDGYNRHKWNLKMLSENKANVLRALGPVLGVTVPTLHLGMMFSTSCWHRDPHAVPWIEYSHMGPAKLWYSVPEKEDENFRAASKTLNPTSCQNKDLWLSSDISMIPPNFLREHNVKVYRVEQNPGEYVLVMPRAYSCSISTGFTVSESVYFATERLLNGLINAFQEIRKSCEPAMFALEQLLKAIVDDKVDSPSLIKKIQPVLRKIVMEELENRRKLELAGIKIIPPMREGETVTSKGKRGKNATPRPPVWNIREQDECEICRRILFLSKVKNIRQGSVLCLEHTLRLMRNKKMLYPVDLEMHCMFDNDNLKILIIKLEQRAAVDGIQTIGESESSLYLNQYDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-