Llin006194.1
Basic Information
- Insect
- Lygus lineolaris
- Gene Symbol
- TPX2
- Assembly
- GCA_030264115.1
- Location
- JAEMON010000002.1:464058-532573[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0098 0.95 10.8 4.3 1 23 600 622 600 622 0.96 2 10 0.0013 0.13 13.6 6.2 1 23 628 650 628 650 0.98 3 10 0.00016 0.015 16.5 1.1 1 23 656 678 656 678 0.97 4 10 7.9e-05 0.0077 17.4 1.3 1 23 686 709 686 709 0.96 5 10 0.005 0.49 11.7 1.2 1 23 986 1008 986 1008 0.98 6 10 0.0018 0.17 13.2 3.3 1 23 1014 1036 1014 1036 0.98 7 10 0.0093 0.9 10.9 2.1 3 23 1044 1064 1042 1064 0.97 8 10 7.2e-05 0.007 17.5 1.2 1 23 1070 1092 1070 1092 0.97 9 10 0.00034 0.033 15.4 0.3 1 23 1100 1122 1100 1122 0.98 10 10 0.53 52 5.4 3.2 3 23 1130 1150 1128 1150 0.97
Sequence Information
- Coding Sequence
- ATGGCAGAAGGTGGCGATGCGTTCGATTGCCGAGTTCCCCAAATCTACGAATCACTATCACTTGCTCTCATAGACCAAATCACCGAGGCCGACGGAGCCGACGAGTTTTTCGatgtTGCAGCTACGCCCCCAAAAGCCGAAGGGGCTCAAACAGAAGAGTTCTTCACGCCTCTGCCCATCCCAAATGCAGCGGTCAACGCCAGGACTCTCCTCTCACCGGTCGTAGAAGAACCAGATGGGACAGAAGGAACTGGAGGTGACTCAAGCGACCGTAGGAAGAGTAGCAGCGATCTTCCTCAGGGTCGCATCATCCTTAAGGCCAAGAGACGTTCATGGCAGTTGCCAAAGAAGGCAGACAATGACAAGAAAGAGGTTGAAAAACTGGCGTCTCAAATGTTCGAGGGAATCCGGCTGGAACCTCCGACTCCAGAGAAGACTCATCCCATGATGACCCGCCAGGATGTTGCTGTCAAGACACCGACCCTGAGTTTGAGAAACCGCCAAGTGATCCGAAATTCGATGAAGAGGATGAGGATCCAGTCGCCATCTACCAAACAACCTCCCGTCAAGTTCATAGCGCTCGCTGAGCAGGTTCAACATTTCTTCAATGACACACCACCCCGCTTCCGGAGGTCTCCACGGAAAATTGGCCCAGAGGaaaatcgcgACAAGGAGAGGGTGAAATTAACATTGACGGTTCCCCACTCCCCTCACCTTCGCACGAAAGACAGAGCGCGATCACCGTCACCCGTCCGTGAAGAAAGTCACCAGATCAAAGCACTTCCTCTGAACCCAAAAGTGTTCCATCCCCCGGATTCGAGTTGCAAGCCGCAGCCAAAACCTGCCACGGTGCCCGAGCCTTTCAACTTGACGGTTGTTCCTAAAAAGGAGGACAAGATATCTGCGGAAAGCATAGAGTTGATACAGTTCAAAGCCCGGCCGATGCCCAGGAGCTGTCGCAGCTCGCTTTCCTCTCTCTGTTCCAACACAAGTACCACTGCGTCCGTGAGGCGAGTTGCCGTCCATGAGAAAGGCGATGGTACCCTCGAAGTGAAAGAAGACTCGAGCCATTGCGGAGTCAGCCACCTCGGCACGAGCAACAGACGGCAACTGAAAGTGCAACCTTTCAGTTTTGATATGAGGGATCGGATCGCATTGCAAAAGAAGGAGCAAAAGATCAGAATGCTGATGGAAGAGGCAGCCAAGATCCCGAAATTCACAGCCCGACCTGCACCGTCCTTTATTACTCACCAATCCGCTGCTGATGAATCTTCTTCCTCCAGTACAGTGGGGAGCACCTCAAGGAAAAGCCTTTTCCACAATCACTCTGCGGCGATTCCAAAACAGCAGTTCAAGGCAAAGCCTGCCTCTGTGTTGAGTAAGGAGCCCTTCAAACCGAAGAAAGCCGACGCCCCACTCACTGACATCACAGAGTTCCAGCTCAATACTGAGCGACGAGCCAAAGAACGAGCCGAGTTGGAGAGAGTCCGGCTCGAGAAGGAAAAAGAACGGCAACAACAACTGGAAAAGGTCACGCGTGAGCAAGCAGAGCTTGAGAAAAAACAGATCAAGGAACTGCGAAAAAGCATGATGCCGAAGCCTACACCGAAGCCCCATTTCTTGGATGGTGGACCTGACGGTAGCTGCGACCCTGGTGGTACAACCACTGAAGTTGAAAAGGCGGCCAAAGATGAGCCAGTCCAGATGGTCATCAATCTGGCTCCTTCTCCTAGTTCTATTGCGTCGTACACCGACTGGGCTGAAACCAAGGATGGATCCAAGAAAGGAGAAAAGATCCACGCCTGCGACAAATGTGACTACAAAGCTAGATTTCTCCATAATTTGAAGATACACATGAAGAGTCATACAGGTAACAGGCCTTTTAGCTGTGACATCTGCCAATATAAAGCCAGATTTCAACATCATCTTACGAcacacatgaggactcacacagGTGAGAAACTCTTTGCTTGTGACAAATGTGACTACAAGGGCAGACAAATCAGTAATCTGAAGAGACACATGACTTCTCACTTAGGTGCTGATAAGAAGATCCACGCTTGTGATAAATGTGACTTCAGATCTAAGAGGCCCGACAATCTAAAGGCACACATAAAGAAGGCTCACTCAGGCGGTTGGGTGACTGAACTGGTTTGTTTTACGTGGTTTGGCCATAGACAACCTCTCAGTGCTCATCCCACGTCTGCTTCGTGGAAAGGTAGAAGGATGATCAGGGTTCACTCTGTTTCCTTGGCATTCGGGATAAGGAAAACTAGAGGTAGACGAGCACAAGCGCAAGTGACCTGTAGAGCTGGATGTCAGAACATCAGGGAAACTGCTGCACATGTGCTGCAGCTTTGCCCATCAGTAGGATTGCCACGTATTGCTAGGGATAATGCGGTGTTGGAGCTTCTCCGGACGTGTTCAGAAAAAAGAGGATGGACAACCTTCTTAGAACCTCATTCCAATGTGGATAGAAGAGGATGGCGGCCTGATCTTGTGGTCAGTAACGAAATTGGAATGGTTGCGATAATTGACGTGAAGGTTGTGTCTGGCTCGGGCAGAAGAACAATGGAGGATATTAGGTTTCAGCAGTATCAGGCAAAATACTCACGTCCCAGTGTCTTGGAGGCAGTGTCAATCTTGACAGGCCAGGATGCTTCCGGCATCAAGGTGGTCCCAGTCGTTCTGACTTGGCGAGGCGTCTGCTCCAAAGCGTCGGCGGGACCACTCATGAAGCAGGGGTTTCCAGAGTTTGTGCTGGGgtatgcattCTTCCGTTTAGATGATAAACCTGCTAATAACAAGCCTAGTGGTACCACCTCTGCAGCTGAAGATGGAATGAAAGATGAGGCAGAACAGATGGTCGTTGACGTGGCTCCTTGTCCAAGTTCTATTGCGTCGTACACTGGCTGGGGAGGAGCAAAGAATCGACCCAAGAGTGGTGAGAAGAAATACGCCTGCAATATGTGTGACTTCCGTACTGCAATAAAAAGCTGCCTGACTGTTCACCTGAGGATTCACACAGaagAGAAAATATATGCATGTGATAAATGTGACTACAAAGCTAGATTTCTCCATAATCTGAAGACGCACATGAAGTCTCATACTGGAAATAGGCCTTATGGATGTCAAATCTGCGGCTACAGAGCTGGACTCCTCCATCACCTGCAGACACACATGAGGACGCACACTGGCGAGAAACTCTTCGCTTGTGACAAATGTGACTACAAGGGTAGGCAAATCAGTAATCTGAAGAGACACATGACTACTCACTTGGAATCTGTTGAGAAGCCGTACGCCTGTGATGTCTGTCCCTACAAATCTGAGAAACTTTTCAATCTGAAGGCGCACATAAGAACTCACTCTGGTGAAAAGCCTTATGGCTGCGATCTCTGTGACTACAGAGCCGGATTCTTCCATCACCTGAAAAGACACTGGCAGACCCACTTGAAACAGAAACCCAACACAGGAAgttctaaaaacaagaaaaccgACGGGGAAAGATTGGAAAATGTTACATCTGACGCAGAGAAATCTGAAGTTGCGGCATCTGATGCAGAGAAAGCTGCAGCGGATTCTAATTCAGCAACAACAGAAACGTCAAAACGTGAAACAGACGTCGATGGAGCCCACACACACCACCCGAGCAGTTTTGATCAAAACCTATTTGGTCTAGGACCATCCTGCACAGTGCGAGAGAGCCTCAATAATTCCACCAATATCCAAGAAAACATCCAACCATCGCTGGAAGATGATCTATTCATTAGTGAAACAACCGGCATCGGTTGCCGCACGTAG
- Protein Sequence
- MAEGGDAFDCRVPQIYESLSLALIDQITEADGADEFFDVAATPPKAEGAQTEEFFTPLPIPNAAVNARTLLSPVVEEPDGTEGTGGDSSDRRKSSSDLPQGRIILKAKRRSWQLPKKADNDKKEVEKLASQMFEGIRLEPPTPEKTHPMMTRQDVAVKTPTLSLRNRQVIRNSMKRMRIQSPSTKQPPVKFIALAEQVQHFFNDTPPRFRRSPRKIGPEENRDKERVKLTLTVPHSPHLRTKDRARSPSPVREESHQIKALPLNPKVFHPPDSSCKPQPKPATVPEPFNLTVVPKKEDKISAESIELIQFKARPMPRSCRSSLSSLCSNTSTTASVRRVAVHEKGDGTLEVKEDSSHCGVSHLGTSNRRQLKVQPFSFDMRDRIALQKKEQKIRMLMEEAAKIPKFTARPAPSFITHQSAADESSSSSTVGSTSRKSLFHNHSAAIPKQQFKAKPASVLSKEPFKPKKADAPLTDITEFQLNTERRAKERAELERVRLEKEKERQQQLEKVTREQAELEKKQIKELRKSMMPKPTPKPHFLDGGPDGSCDPGGTTTEVEKAAKDEPVQMVINLAPSPSSIASYTDWAETKDGSKKGEKIHACDKCDYKARFLHNLKIHMKSHTGNRPFSCDICQYKARFQHHLTTHMRTHTGEKLFACDKCDYKGRQISNLKRHMTSHLGADKKIHACDKCDFRSKRPDNLKAHIKKAHSGGWVTELVCFTWFGHRQPLSAHPTSASWKGRRMIRVHSVSLAFGIRKTRGRRAQAQVTCRAGCQNIRETAAHVLQLCPSVGLPRIARDNAVLELLRTCSEKRGWTTFLEPHSNVDRRGWRPDLVVSNEIGMVAIIDVKVVSGSGRRTMEDIRFQQYQAKYSRPSVLEAVSILTGQDASGIKVVPVVLTWRGVCSKASAGPLMKQGFPEFVLGYAFFRLDDKPANNKPSGTTSAAEDGMKDEAEQMVVDVAPCPSSIASYTGWGGAKNRPKSGEKKYACNMCDFRTAIKSCLTVHLRIHTEEKIYACDKCDYKARFLHNLKTHMKSHTGNRPYGCQICGYRAGLLHHLQTHMRTHTGEKLFACDKCDYKGRQISNLKRHMTTHLESVEKPYACDVCPYKSEKLFNLKAHIRTHSGEKPYGCDLCDYRAGFFHHLKRHWQTHLKQKPNTGSSKNKKTDGERLENVTSDAEKSEVAASDAEKAAADSNSATTETSKRETDVDGAHTHHPSSFDQNLFGLGPSCTVRESLNNSTNIQENIQPSLEDDLFISETTGIGCRT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -