Basic Information

Insect: Lygus lineolaris
Gene Symbol: -
Assembly: GCA_030264115.1
Location: JAEMON010000017.1:1237227-1251476[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 9.8e-05 0.0095 17.1 1.8 1 23 157 179 157 179 0.98

2 6 3.3e-05 0.0032 18.6 0.6 1 23 185 207 185 207 0.97

3 6 0.0002 0.02 16.1 1.2 1 23 213 235 213 235 0.98

4 6 2.3e-05 0.0022 19.1 0.7 1 23 241 263 241 263 0.98

5 6 9.4e-06 0.00091 20.3 1.1 1 23 269 291 269 291 0.99

6 6 1.2e-06 0.00011 23.2 1.4 1 23 297 319 297 319 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	9.8e-05	0.0095	17.1	1.8	1	23	157	179	157	179	0.98
2	6	3.3e-05	0.0032	18.6	0.6	1	23	185	207	185	207	0.97
3	6	0.0002	0.02	16.1	1.2	1	23	213	235	213	235	0.98
4	6	2.3e-05	0.0022	19.1	0.7	1	23	241	263	241	263	0.98
5	6	9.4e-06	0.00091	20.3	1.1	1	23	269	291	269	291	0.99
6	6	1.2e-06	0.00011	23.2	1.4	1	23	297	319	297	319	0.98

Sequence Information

Coding Sequence: ATGGAAGACGGAAGTGTGATCAAACAAGAAGCGATGTCGGATGAAGAGGATGTACCTGAAGAAGAGATGATTATTGGAGGGCGTCCGATTAGCGAAGAGATGATGATTGCAAAAGAGAAGAAGTTGGCGATCAAAGAAGAGATGATGCTGATTGAAGAAGATCGCAATTTGATGATTAAAGAAGAGGTGGTGATAGAAGATCAGTTGCTTGAGGGAAAGGGGATGATTGGAGGGATTCTGATGATCAAACGAGAGTTGATGATCAATGATGGACCTGAGGACAACCTCTTGTTCCTCCAAGCTGCTACACCTTGTGATATTTCTCAGTGTTGCGTCCTCCTGAGAAGATTGTCTGAAGATGAAATCCAGAGATGGTCTTCTAGGGGAGGAGTGAACCGACCATCAGGTGACGAGAATGATTTAGGAGAAGGACAATCGATTGAGAAGTCAGTCAGAATTGAGAATCCCTTTGTCTGTGACTTTTGCGGTTACAGAACCAAGAAGTCATCCCGTCTGAAGGTTCACGTCAGGAcccacactggcgagaagccctttgcctgtgatctttgtgattacagagccaagCAGTCATTCGATCTTAAGGTTCACATGAGGAcccacactggcgagaagccctatgcctgtgatctttgtgattacagagccaagAAGTCATTCAAACTTAGGGTTCACATGAGGACccacactggtgagaagccctatgcctgtgatctGTGTGATTTCAGAACCAGTCAGTCATCGCAAGTTAAGGTTCACATGAGGACCCACACTGACGAGAAGCCCTATACCTGCGATCTTTGTGATTTCAGAACAAAAACCCCAAGTTATCTGAAGGTTCACGTGAGGACccacactggtgagaagccctatgcctgtgacttttgtgattacagaaccaAGCGCTCATCCGATCTGAAGGTTCACATGAGGACACACACTGGAATCTGGTTAGTGGAGGACCTAGTGGGCGTGGCCAGGCTTGAGGTGAGCCCCCACCAGGAGGGATCAAGAAGAGGGCGGAGAGGTTCTCCTCCAGTTCGTCCGACATCTGTGAGGGAGATAAGTTATCATTGTTGTGATTTCAATACTTTCACAAATTCCAAAGTGATCTCCACCACTAAGAAAGACAACCAGACAGTCATCGATGGCTCGCTGGCCCATAACCTCTCTGATACAGCATTCTTCCCATTCAAAGAGGCAGTGAATCTGGAGGGACGCCCAGGCCAAAGTCTCGACGACCGCTTTCGAATTGACGTCAGCGACGTTCTTGAAGGTCAGGCAGACGACAATGTTCTCCCCGGGGATCCAAACGGGACCTCCGACCAAACGAGCGGATATCAAACTGGTTCAGTGGAGATGGGCGTGGCCAGGATTGAAGTGAGCCCGCCCCACAAGGAGGGAACAACAAGAGGGCGGAGAGGTTCTCCTCCAGTTCATCCGACATCTGAGATGGCGGATGAAATAGTGATCAAACAAGAGGTGATGGAAGAAGAGGTGGACAATGAAGTAGAGATGGTGATTAGACAGCAGATGATTGTAGAAGAGATGGCTACTACAGAAGATGGGATTACTATAAAAGAAGAGGTGATGAATGGAGAAGATCAGATCAAAGAAGAGGACCTGTGTGAAGAATGTCGGAACATTGAAGGAGCAATGATCAAGGAAGAACCACTGGACAACCTCTCAACTCTTCATCCGGCCACACCTGCTTATGTTCGTCAGTGTTGCGTCCTCCTGAGAAGATTGACTGAAGATGAAATCCGGAGGTGGTCTTCGGGGGTAGGAGTGAACCGACCATCAGGTGACTTGCAGGACTTCAAAGCTCATCAGCAAACGCAGGAAGACGTCAAAATCTGA
Protein Sequence: MEDGSVIKQEAMSDEEDVPEEEMIIGGRPISEEMMIAKEKKLAIKEEMMLIEEDRNLMIKEEVVIEDQLLEGKGMIGGILMIKRELMINDGPEDNLLFLQAATPCDISQCCVLLRRLSEDEIQRWSSRGGVNRPSGDENDLGEGQSIEKSVRIENPFVCDFCGYRTKKSSRLKVHVRTHTGEKPFACDLCDYRAKQSFDLKVHMRTHTGEKPYACDLCDYRAKKSFKLRVHMRTHTGEKPYACDLCDFRTSQSSQVKVHMRTHTDEKPYTCDLCDFRTKTPSYLKVHVRTHTGEKPYACDFCDYRTKRSSDLKVHMRTHTGIWLVEDLVGVARLEVSPHQEGSRRGRRGSPPVRPTSVREISYHCCDFNTFTNSKVISTTKKDNQTVIDGSLAHNLSDTAFFPFKEAVNLEGRPGQSLDDRFRIDVSDVLEGQADDNVLPGDPNGTSDQTSGYQTGSVEMGVARIEVSPPHKEGTTRGRRGSPPVHPTSEMADEIVIKQEVMEEEVDNEVEMVIRQQMIVEEMATTEDGITIKEEVMNGEDQIKEEDLCEECRNIEGAMIKEEPLDNLSTLHPATPAYVRQCCVLLRRLTEDEIRRWSSGVGVNRPSGDLQDFKAHQQTQEDVKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -