Basic Information

Insect: Lygus lineolaris
Gene Symbol: -
Assembly: GCA_030264115.1
Location: JAEMON010000017.1:1366207-1372095[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.031 3.1 9.2 0.0 1 23 137 159 137 159 0.96

2 8 0.00088 0.085 14.1 0.0 1 23 165 187 165 187 0.98

3 8 0.00028 0.027 15.7 3.9 1 23 193 215 193 215 0.97

4 8 2.5e-05 0.0024 19.0 0.1 1 23 221 243 221 243 0.98

5 8 4e-05 0.0039 18.3 1.4 1 23 249 271 249 271 0.98

6 8 1.1e-05 0.0011 20.1 2.2 1 23 277 299 277 299 0.99

7 8 0.00018 0.018 16.3 0.1 1 23 305 327 305 327 0.97

8 8 0.00042 0.041 15.1 3.3 1 23 333 356 333 356 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.031	3.1	9.2	0.0	1	23	137	159	137	159	0.96
2	8	0.00088	0.085	14.1	0.0	1	23	165	187	165	187	0.98
3	8	0.00028	0.027	15.7	3.9	1	23	193	215	193	215	0.97
4	8	2.5e-05	0.0024	19.0	0.1	1	23	221	243	221	243	0.98
5	8	4e-05	0.0039	18.3	1.4	1	23	249	271	249	271	0.98
6	8	1.1e-05	0.0011	20.1	2.2	1	23	277	299	277	299	0.99
7	8	0.00018	0.018	16.3	0.1	1	23	305	327	305	327	0.97
8	8	0.00042	0.041	15.1	3.3	1	23	333	356	333	356	0.92

Sequence Information

Coding Sequence: ATGGGAGAAATGGATTCCTCCGAGGCGGGTCAGATGGAGATGGCGAGAAAAAATGGCATCTCTTCTGGTTGGGCTGCTGAGGTGGGTTTCATCAAGGAGGAACTGGATGTGAAGCAGGATGATGATGGAGAGGTGGATGTCCAGCAAAGCTGCTCAAAATCAATGACAAAGAGTTTTCTTGCTGAGCAGATCGAAGAACCAGTCTTCATCATAGACAGTGGTTCTGAAGATGAATTTTTTGTAGAAGGTGAACCAATAGCGTCTAATCCGATGCTCGTGGATCATCTCCAGGTTGCTCCATCTCTTCAATATCTCTCAACTGCTCAACAACATGAAGCCGAAGGCAGTACAGACTCCCAGAAGGATCCATCAAGTTTGCAGACTGACAACGATGGCGGTATGAAGTTCCATTACTGCGGCATCTGCGGCTATAGAGCAGGCGAACTCGCTTCCTTGATCGCTCACATTACGAGTCACAAAGACATGGGAGAGTACGCTTGTAATATTTGTGGCTACGGACCCGTAAATTTGGTCGACCTGAAGAACCACATGAGAAACCATACGAGAGAGAGGCCCTACGCCTGCGACGTTTGTGACTACAGATCGAGTCACGCCAGTCATTTGAAGTCACACAAGACCACTCATCAGGGGAAGAGAACCTACGCCTGCGGCATTTGCGGGTACAGAGTCGAGAGATTGGACACTTTGGACCGACACATGAGGATTCACATGAGCGATAGATTCTACGCCTGTGACGTTTGTGACTACAAAACGCGACTTGCCAGTCATTTGAAGTCACACGTAAGGACACACTCGGGTGAAAGAACCTACTCGTGCGGAATTTGCAACTACAAGACCGTGCACTCGGGAACTTTGAGGTCACACATGAGAACCCACACAGGCGAGAAACCATTCGTTTGCAACGTTTGCGACTACAGAACTGGGGATGTCAGTAATTTGAGGAAACACGCGTTGATTCACAATGACGAGAGGCCTTTCGAGTGCGGAATTTGCGACTACCGCACCACGAGGAAATACTGCTTGAAGAGACACAAGGATAACGCCCATAAAGACCACCAGTCAACTCCAGAGTCACACAACACTTAA
Protein Sequence: MGEMDSSEAGQMEMARKNGISSGWAAEVGFIKEELDVKQDDDGEVDVQQSCSKSMTKSFLAEQIEEPVFIIDSGSEDEFFVEGEPIASNPMLVDHLQVAPSLQYLSTAQQHEAEGSTDSQKDPSSLQTDNDGGMKFHYCGICGYRAGELASLIAHITSHKDMGEYACNICGYGPVNLVDLKNHMRNHTRERPYACDVCDYRSSHASHLKSHKTTHQGKRTYACGICGYRVERLDTLDRHMRIHMSDRFYACDVCDYKTRLASHLKSHVRTHSGERTYSCGICNYKTVHSGTLRSHMRTHTGEKPFVCNVCDYRTGDVSNLRKHALIHNDERPFECGICDYRTTRKYCLKRHKDNAHKDHQSTPESHNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -