Llin026387.1
Basic Information
- Insect
- Lygus lineolaris
- Gene Symbol
- ZNF296
- Assembly
- GCA_030264115.1
- Location
- JAEMON010000014.1:17139386-17154394[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.001 0.098 13.9 1.9 1 21 139 159 139 160 0.96 2 12 0.00016 0.016 16.4 0.6 3 23 181 201 180 201 0.99 3 12 4.4e-06 0.00042 21.4 0.7 3 23 209 230 207 230 0.96 4 12 0.00041 0.04 15.1 0.7 2 23 239 260 238 260 0.92 5 12 0.029 2.8 9.3 3.9 1 20 267 286 267 288 0.94 6 12 0.13 12 7.3 0.1 2 23 317 338 316 338 0.95 7 12 0.0017 0.16 13.2 0.3 2 23 343 365 342 365 0.96 8 12 0.0001 0.01 17.0 0.5 2 23 371 392 370 392 0.97 9 12 0.0022 0.21 12.9 0.6 1 23 398 420 398 420 0.92 10 12 8.9e-05 0.0087 17.2 0.2 1 23 426 448 426 448 0.96 11 12 0.002 0.2 13.0 5.0 2 23 454 475 453 475 0.98 12 12 7.7e-05 0.0075 17.4 0.2 2 21 483 502 482 503 0.93
Sequence Information
- Coding Sequence
- ATGGAGGGGGACTCGGACGATTTTAGGATGGACGATTCGGACGGGTTTTCTGACAACGACGACGACGATGATCCTGACGTTCCTAGGTGTGGAGTGACACTTGCTCAGTTGAAGACGAGGATAAAGGAGGAGATCGTAGAAAATGGCGAGGAAGCACTTGCTAACGGCACCATCCCAGGTGTCTTGAAGGAAGAACAGGTGAGGAAGGATTTGACTAACTCAGAGGGGGAGGGTGATGacgaagatgatgatgatgacctCGGTGGTGTGGATGACGACGACAGCAAagatgatgaagatgaagaacaACAGGATGAACTGGAATTCAAAGTGGCAAACTTTCTGGCAGACACATCAGTAAGTCGACGGGGATCGAAGAAGTGCAAAAAAGGCTCAATCAAATCTGCGTGCAAATTCAAGTGCAATCAGTGTTCGGCACTTTTCCGATACAAATCTACTTTGACGTATCATATGAAGTCCGAGTGCGGGACAGGAGTCATCACTGCGGGGTCGAAGGTTGTTCGCAATTCACCGGCCCTCTGCAACATCTGTAACAAGCAGCTGTCTTCCAGAACCTCTCTCATGGTTCACCTCCGCATTCACACTGGCGAACGACCGTTTGGTTGCTCTGAGTGTGGACAAAGTTTCTCCCAGAACGCTCACCTCAAGGATCACATTGCTAGACTTCACTCGCAGGGTCCTGATCAGCTGTTTCTCTGCAGGGCGTGCAACACAACCTTCTCAGACAGAGCCACTCTTCGCACCCACATGGAGGAACATGTAGGGCAGCAACGACCCTTCCAGTGCCCAACTTGTCGGAAAAGATACCAGACACAAGAAAGGTTGACATCGCATGTTTGCCATGGAAAGACCATAGGAGAGGGGCAGGGTTCAGGCAGCAGTGACGTCGCAGCTTCTGGGACGACCTTGGGAGGCAAAAGGGGCTTAACCTGTACAGCCTGTGGGTTCCTGGCTCCCACCAGGTCAGACCTGAGGGACCACCTTGCTCGACACCCTCTCCCTGTCACGTGCCCTGAGTGCTCGGAGAAGTTTGACTCCCTTGCTGCTTGGAGAAAGCACAACCGTCGTTACCACAGGTCGAGGCTTAGCAAATGTTCGTTTTGTGGACGAACTTTCCCTTCCGAGTATGATGTGAGAGTCCACGAGAGGTCACACACGGGAGAGCGCCCCTACCGTTGCACTTTTTGTGGCAGaGGGTTTGCTCGAAAGTCAATTCTAGATGTCCACACAACACTTCACACTGGGAGACGGGACTATGTGTGTTCAGATTGTGGGTCAGCTTTCAACCGCAAGAGCAAATTGGATGTACATCGTGCGGAGCACACTGATAGCCATGTCCAGTGCCAGACGTGCCAGAAAACCTTCAAATGCAAAGCGTATCTCACGACTCACCTCAAAACGCACGAAAGGGACTCAACGAGTGTTTCGTGCGCTGATTGTGGCCGCTCCTTCACCTCACGTCGTGGCCTTCGCTCTCACTTGTCGAAAGGGGCGTGTCCCTCCACGACATCCCCCACCCCTGGTGTGACCAACCAGCCCCCGCCCGCTTCTGCGTCGACCAATCATCTGCTCAGTCCTCCGATACCCAACATGCCCTTGCTTGCAGCTCCGCCCCCACTCATCCCCCTCATCGTTTCGCCCCTTTTCATGTCCAAACTGGTGAGTCTTCCCCCAGCTGACTCCAAACGGATCAGTTAA
- Protein Sequence
- MEGDSDDFRMDDSDGFSDNDDDDDPDVPRCGVTLAQLKTRIKEEIVENGEEALANGTIPGVLKEEQVRKDLTNSEGEGDDEDDDDDLGGVDDDDSKDDEDEEQQDELEFKVANFLADTSVSRRGSKKCKKGSIKSACKFKCNQCSALFRYKSTLTYHMKSECGTGVITAGSKVVRNSPALCNICNKQLSSRTSLMVHLRIHTGERPFGCSECGQSFSQNAHLKDHIARLHSQGPDQLFLCRACNTTFSDRATLRTHMEEHVGQQRPFQCPTCRKRYQTQERLTSHVCHGKTIGEGQGSGSSDVAASGTTLGGKRGLTCTACGFLAPTRSDLRDHLARHPLPVTCPECSEKFDSLAAWRKHNRRYHRSRLSKCSFCGRTFPSEYDVRVHERSHTGERPYRCTFCGRGFARKSILDVHTTLHTGRRDYVCSDCGSAFNRKSKLDVHRAEHTDSHVQCQTCQKTFKCKAYLTTHLKTHERDSTSVSCADCGRSFTSRRGLRSHLSKGACPSTTSPTPGVTNQPPPASASTNHLLSPPIPNMPLLAAPPPLIPLIVSPLFMSKLVSLPPADSKRIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00386627;
- 90% Identity
- iTF_00145854;
- 80% Identity
- -