Basic Information

Insect: Lygus lineolaris
Gene Symbol: -
Assembly: GCA_030264115.1
Location: JAEMON010000008.1:5292970-5294910[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0015 0.14 13.4 2.7 1 23 161 183 161 183 0.98

2 16 0.0076 0.74 11.2 5.4 1 23 193 216 193 216 0.98

3 16 0.02 1.9 9.9 0.8 3 23 224 244 222 244 0.96

4 16 0.0018 0.18 13.1 1.5 1 23 250 272 250 273 0.94

5 16 0.69 67 5.0 6.8 1 20 278 297 278 301 0.90

6 16 0.012 1.2 10.5 1.6 3 23 310 330 308 330 0.96

7 16 0.0043 0.42 11.9 0.2 1 23 336 358 336 358 0.98

8 16 0.025 2.5 9.5 1.3 1 23 364 386 364 386 0.98

9 16 0.00085 0.083 14.2 0.3 1 23 392 414 392 414 0.96

10 16 0.00013 0.013 16.7 0.4 1 23 420 442 420 442 0.97

11 16 0.0017 0.17 13.2 0.1 1 23 448 470 448 470 0.98

12 16 0.00085 0.082 14.2 5.9 1 23 476 498 476 498 0.99

13 16 0.0024 0.24 12.7 0.7 1 23 504 526 504 526 0.96

14 16 0.0014 0.14 13.5 0.7 3 23 534 554 532 554 0.97

15 16 5.1e-05 0.005 18.0 0.7 1 23 560 583 560 584 0.93

16 16 0.00016 0.016 16.4 2.4 1 23 619 641 619 641 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0015	0.14	13.4	2.7	1	23	161	183	161	183	0.98
2	16	0.0076	0.74	11.2	5.4	1	23	193	216	193	216	0.98
3	16	0.02	1.9	9.9	0.8	3	23	224	244	222	244	0.96
4	16	0.0018	0.18	13.1	1.5	1	23	250	272	250	273	0.94
5	16	0.69	67	5.0	6.8	1	20	278	297	278	301	0.90
6	16	0.012	1.2	10.5	1.6	3	23	310	330	308	330	0.96
7	16	0.0043	0.42	11.9	0.2	1	23	336	358	336	358	0.98
8	16	0.025	2.5	9.5	1.3	1	23	364	386	364	386	0.98
9	16	0.00085	0.083	14.2	0.3	1	23	392	414	392	414	0.96
10	16	0.00013	0.013	16.7	0.4	1	23	420	442	420	442	0.97
11	16	0.0017	0.17	13.2	0.1	1	23	448	470	448	470	0.98
12	16	0.00085	0.082	14.2	5.9	1	23	476	498	476	498	0.99
13	16	0.0024	0.24	12.7	0.7	1	23	504	526	504	526	0.96
14	16	0.0014	0.14	13.5	0.7	3	23	534	554	532	554	0.97
15	16	5.1e-05	0.005	18.0	0.7	1	23	560	583	560	584	0.93
16	16	0.00016	0.016	16.4	2.4	1	23	619	641	619	641	0.99

Sequence Information

Coding Sequence: ATGGCGGATTCAGCTGTCAAAAAGGAAGAAGAGGAGCATCCAACATCAGTCAAAGAGGTAAACAATACAGTGGATGAATCCTCCGGAAATCAGGTTAAGCCGTTTGTCATTGAGAGGCTGTACATCACAGATGAACTTGACATCAAGTATGAGCCATTCATTTATGATGAACCAGAAATGCATGATACGAGCAACCACAACAGCAGTTTTACTTCAGGAGATACCTTCGAAAAAGAGGACAAAGAATATATAATTCTCCCAGCTGGAGGCATGAACGTAGAGGAAATGGTCATACATAATCATGTGACCTTGAATCATAACATGGAAGACGACGACCTAGCTCTCCACTCCTGTGCCTCTACATCACCTGAGCCCATGACGACCTCCAAGGATGAGATGAGCATTGGTTATGATCTTGATTGCCGACTAGTATTGGAGAAGATATCTGAAGCAGAAATCCTCAAATGGGCTCCAAAGATCTACGAATGTAACACTTGTGGCTACAAAACCACACTTCGGAAGAAATTGAAGAGACATTTCATGGTTCACAATAGGGAGAAGCCTGCCACAATAGGATATACCTGTGACACTTGTGATTACCGATGCAGGGAATTATGTGAACTGAAGGAACACATGAAGTCTCAACACAAGGCTAAATTCCATACATTCTGTGACATTTGTGGCTATGTTGCTGGAAATGCCAGACATTTGAAGATGCACAAGACTTCTCACGAAGAGTGGAGACCATATGCGTGTGATAATTGTGAGTACAGGTCTAAAACGTCACAAACTTTGAGGAAACACATCGCTGCTCATCATCGGATGAGATCTTACACCTGTCATAAATGTTCGTACCGTTGCAGCAAATTCGATGACATGCGAAAACACAACGTAAATTCTCACTTTGACGCGAATTCCTTCACGAACTGTTTTATTTGTgatttcagagctgaaaattcaaatcatttacTGAGACACATGACCATTCACAGAGGCAACAAGCCCTATGCATGTGATATTTGCGTTTACAGAGCCAGGGACAACAGTATTTTGAAAAGGCACATGCTAACTCACTCTGTTAAAAAGCCCTTTAAATGCAATATTTGTACATTCCAAACTGTACATGCTAACGTATTGAAGTATCACATGGCGattcacactggcgagaagccctatgcttGTGAAATGTGTGACTACAAATCTTTGAGACCAAGCGATTTGAAGGCTCACATGAGTAAGCACACAGGTGAGAAACCATTTGCCTGTGAATTATGTGACTACGGTACTGCAACAATGCGTAATTTAAGGAGGCACATGACGACTCACACGGATAATAAACCCTATGCGTGTAATATTTGTGTTTACAAAGCTGGAACAccggaaaagttgaagacacacatgatgactcacacaGGAGAAAAACCATACAAATGTCATATGTGTGATTTCAAAAGCAGGAGATCTGATTGTTTGAAGCTGCATATGTTAGTTCATATAGATGAGAGACCTCATGCATGTGACATTTGTAGCTACAGGGCTGGACAGCTCGGCTCCTTGAAGAGTCACATGAAAACCCACACAGGTGAGAAACCCTTTGGCTGTAACGTATGTGACTACAAGGCTGCGCATCGCAGTGCTCTGAGAACACACATGACTGTGCACACAGGTGAGAAACCCTATGCTTGTAACATCTGTGACTACAAATTTGCCCTACGCAGTAAACTGAGAGCACACATGACTGCTATTCATCACTCAGATGAGAAAGAATATGTCGGTGATGATTTCCGTGATTCCAGATCCTCAAAGacggaaaaattaaattataatctACGGACCCGCACTGTCAAGAAGTCATATCAATGTTACAGCTGTGGTTACAGAGCTGGAACCCGAGTTCACTTGAAAAGACACATACGGACCCACACTGGCGAGGAGCCCTGA
Protein Sequence: MADSAVKKEEEEHPTSVKEVNNTVDESSGNQVKPFVIERLYITDELDIKYEPFIYDEPEMHDTSNHNSSFTSGDTFEKEDKEYIILPAGGMNVEEMVIHNHVTLNHNMEDDDLALHSCASTSPEPMTTSKDEMSIGYDLDCRLVLEKISEAEILKWAPKIYECNTCGYKTTLRKKLKRHFMVHNREKPATIGYTCDTCDYRCRELCELKEHMKSQHKAKFHTFCDICGYVAGNARHLKMHKTSHEEWRPYACDNCEYRSKTSQTLRKHIAAHHRMRSYTCHKCSYRCSKFDDMRKHNVNSHFDANSFTNCFICDFRAENSNHLLRHMTIHRGNKPYACDICVYRARDNSILKRHMLTHSVKKPFKCNICTFQTVHANVLKYHMAIHTGEKPYACEMCDYKSLRPSDLKAHMSKHTGEKPFACELCDYGTATMRNLRRHMTTHTDNKPYACNICVYKAGTPEKLKTHMMTHTGEKPYKCHMCDFKSRRSDCLKLHMLVHIDERPHACDICSYRAGQLGSLKSHMKTHTGEKPFGCNVCDYKAAHRSALRTHMTVHTGEKPYACNICDYKFALRSKLRAHMTAIHHSDEKEYVGDDFRDSRSSKTEKLNYNLRTRTVKKSYQCYSCGYRAGTRVHLKRHIRTHTGEEP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -