Basic Information

Insect: Lygus lineolaris
Gene Symbol: -
Assembly: GCA_030264115.1
Location: JAEMON010000016.1:18990683-18993877[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.14 14 7.2 3.1 1 23 83 105 83 105 0.98

2 15 0.0014 0.13 13.5 0.3 1 23 115 137 115 137 0.98

3 15 0.00045 0.044 15.0 2.2 2 23 143 164 143 164 0.98

4 15 9e-05 0.0088 17.2 2.7 1 23 170 192 170 192 0.99

5 15 0.39 38 5.8 6.8 2 23 199 220 198 220 0.97

6 15 6.4e-05 0.0063 17.7 3.8 1 23 226 248 226 248 0.99

7 15 0.013 1.3 10.4 0.5 2 23 255 274 254 274 0.97

8 15 0.00079 0.077 14.3 0.4 1 23 280 302 280 302 0.97

9 15 1e-05 0.001 20.2 4.8 1 23 308 330 308 330 0.99

10 15 7.7e-05 0.0075 17.4 3.2 1 23 336 358 336 358 0.97

11 15 0.00038 0.037 15.2 6.2 1 23 364 386 364 386 0.97

12 15 0.00021 0.021 16.0 2.8 1 23 392 415 392 415 0.95

13 15 9.2e-06 0.0009 20.3 2.5 1 23 421 443 421 443 0.98

14 15 0.035 3.4 9.1 0.9 1 23 449 471 449 471 0.94

15 15 0.11 10 7.6 5.1 3 23 479 500 478 500 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.14	14	7.2	3.1	1	23	83	105	83	105	0.98
2	15	0.0014	0.13	13.5	0.3	1	23	115	137	115	137	0.98
3	15	0.00045	0.044	15.0	2.2	2	23	143	164	143	164	0.98
4	15	9e-05	0.0088	17.2	2.7	1	23	170	192	170	192	0.99
5	15	0.39	38	5.8	6.8	2	23	199	220	198	220	0.97
6	15	6.4e-05	0.0063	17.7	3.8	1	23	226	248	226	248	0.99
7	15	0.013	1.3	10.4	0.5	2	23	255	274	254	274	0.97
8	15	0.00079	0.077	14.3	0.4	1	23	280	302	280	302	0.97
9	15	1e-05	0.001	20.2	4.8	1	23	308	330	308	330	0.99
10	15	7.7e-05	0.0075	17.4	3.2	1	23	336	358	336	358	0.97
11	15	0.00038	0.037	15.2	6.2	1	23	364	386	364	386	0.97
12	15	0.00021	0.021	16.0	2.8	1	23	392	415	392	415	0.95
13	15	9.2e-06	0.0009	20.3	2.5	1	23	421	443	421	443	0.98
14	15	0.035	3.4	9.1	0.9	1	23	449	471	449	471	0.94
15	15	0.11	10	7.6	5.1	3	23	479	500	478	500	0.97

Sequence Information

Coding Sequence: ATGGGATCCGCTTCGGTTCCTGCATTGAATGCTGCAGTCAAAACTGAAGAGTCGCCTGATGTTCCTATTAAAGAAGAAATCGACCATCGAATTTCCATAAAGCAAGAGCTCGATATTCCTGGAGATGCTAGTCTAAAAATGGAAGTAACTTTTCTAGTCAAGGAAGAACCTATGCAACAAGAATCGTGTAATAAGAACGGTATCAGAGAGCACTTCCTTTGCAGCAACGATAAACAGCAAAAGAAGTACTCATGTGCTCATTGTCATGTTACTGTTCTGGGAAAACGAAAACTGAAGGCCCACATACGAAAACATTTACCGGCAAAAACCAAGAAATGGCCATATATGTGTACAGTCTGTGATTACAAAGGTGCGCTTTGGCGTCAATTGAAGTCCCATCTACTGACGCATGGGCCAAAGAATGAAACGTGCCCGCATTGTGACTATAAAGCCTCTAGTAAACACGCTATGAGAGTCCACATCAGGGTCCATACAGGCGAAAAGCCATACAAATGTCTGGAATGCAACTACACGGCAAGGCAGCCATCACACTTGAGATCGCACAAGTTGACTCATTCGGGCGAACGGCCGCAGCAGTGTCCTCATTGTGAGTTTAAATGTGCGACGAAAAGCCAGATGACCTGCCATATTCGAGGGCATACCGGGGAGAAACCTTTTCAGTGTCCTCATTGTGACTACAGAGCTGGTTACACGTCACATCTAAAGAGACACATTATGACCCACACTGGTGAGCGACCAAATAAGTGTCCAATTTGTGACTACCGCTGTGCTGGAAATTTGAGTGCTCATTTACGAGTACATGCTAAAGCTAAAAGGTTTTTCTGCAATGACTGCGAGTACAGTAGTGCAGAGTTGTCCTCCTTGAAATCACACATTTTAAGCCATACCAAACTGAAACTGTTCAAATGCCCACATTGTGAGTTTGCTTGTTCACGGAAATACTCATTAACGTCTCATATACGCGTGCATACGGGAGAGAAACCTTATGCTTGTCCGTTTTGCGATCACCGAACGAGACAACAGACTCATCTAAAAGTACACATAAGAGCTCACCTGGGCGAGAAGCCGCATTCCTGCTCGATTTGTGATTTCAAGTGCATTAGCCGCAGCTACTTGAAACAACACATGCGCCAACACACTGGAGAACGTCCTTACGTATGTCACTACTGCGGATACTCCTCTGCTCACAGGATCAGCCTGCAGCAACACATCATGTTCAACCATTTCAACCTAAAGCCCTTCGTATGCCCGCACTGCAACTACAGGACGACGGGAAAGTCTCAACTGAAGCGCCACGTCCTCACCCATTCCGGAGTCCGTGCTCATAAATGCGACGCCTGCCCTTATAAAGGGTTGACGGCCGGAGACCTCAAAAGGCATCAAAAAACTCACGTCGGACGAAAACCCAACATTTGCCCTTTCTGCAGCCACCGGACATCGTTGCAACACACCCTCCAAAATCACATCAAACGAAAGCATCTTGGACATCCTTATCCCAAACGGAAGTCTATCTCAGCACATGAAAAGGATAAAGAAACTATTGATCTCAAAAAGTAA
Protein Sequence: MGSASVPALNAAVKTEESPDVPIKEEIDHRISIKQELDIPGDASLKMEVTFLVKEEPMQQESCNKNGIREHFLCSNDKQQKKYSCAHCHVTVLGKRKLKAHIRKHLPAKTKKWPYMCTVCDYKGALWRQLKSHLLTHGPKNETCPHCDYKASSKHAMRVHIRVHTGEKPYKCLECNYTARQPSHLRSHKLTHSGERPQQCPHCEFKCATKSQMTCHIRGHTGEKPFQCPHCDYRAGYTSHLKRHIMTHTGERPNKCPICDYRCAGNLSAHLRVHAKAKRFFCNDCEYSSAELSSLKSHILSHTKLKLFKCPHCEFACSRKYSLTSHIRVHTGEKPYACPFCDHRTRQQTHLKVHIRAHLGEKPHSCSICDFKCISRSYLKQHMRQHTGERPYVCHYCGYSSAHRISLQQHIMFNHFNLKPFVCPHCNYRTTGKSQLKRHVLTHSGVRAHKCDACPYKGLTAGDLKRHQKTHVGRKPNICPFCSHRTSLQHTLQNHIKRKHLGHPYPKRKSISAHEKDKETIDLKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -