Llin009556.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lygus lineolaris
Gene Symbol
-
Assembly
GCA_030264115.1
Location
JAEMON010000003.1:25184245-25196127[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.9 87 4.6 0.2 1 23 294 316 294 316 0.83
2 12 1.8e-05 0.0017 19.5 1.5 1 23 324 346 324 346 0.98
3 12 0.00071 0.069 14.4 0.5 1 23 353 375 353 375 0.97
4 12 7e-06 0.00069 20.7 0.4 1 23 381 403 381 403 0.98
5 12 3.6e-06 0.00035 21.6 0.6 1 23 410 432 410 432 0.99
6 12 0.00024 0.024 15.9 0.7 1 19 438 456 438 460 0.93
7 12 1.2e-05 0.0012 20.0 0.1 1 23 466 488 466 488 0.98
8 12 6.2e-06 0.0006 20.9 0.8 1 23 494 517 494 517 0.96
9 12 0.00035 0.035 15.4 0.3 1 23 523 546 523 546 0.95
10 12 2.9e-05 0.0028 18.8 3.0 1 23 552 574 552 574 0.99
11 12 0.00011 0.011 16.9 0.4 1 23 580 602 580 602 0.94
12 12 0.00016 0.016 16.4 0.2 1 23 608 632 608 632 0.94

Sequence Information

Coding Sequence
ATGACGGCTGATTCTGATAAGAATCAGGCCAACATAGTATGCTTGATATGCAATGCCAGCATCGGCGTGTCCACAAGAAACAACTGcccaattttccatttcaacgtTACCTCCTCAGAACAGCCGGTAGCTAACATATTGAGCGTAGTACTTGGCCAAGAGGTGCGTAAAGAATTTGTGCACAGtgaaattatttgtaaaaaatgCTACAAACTTTGCAACGAAGTGGACGAGCTGCAGGAGAGACTCACGGAGATAAAAATGGAATTGAACAACTATTATCAGAAAACATTAAGGAAACTTGAAGGAATCGACGACGAAGAACCAGAGGCGCCGGCACCATCGCCTATTGTACCTAAACCTTCCGTCACCCCAGTAGTCAAGAGAGGGCCAGGGCGACCTCGGAAGACACCCCTGTCGAACAGGCCTGTAGAGTCAGTGGAAACTTCTCGATCGAAAGATGATGTCAGTGATGATGATGCGGAAATAGTAGGTGTTAGCGACGACGACGAAATCATAGAAGACGATTTCATAGGCGTCGGGATGGACGACGAAAATGACGAAGACTACATTCCAGAAAACCGACAGAAAGGTGAAGCTGCGCGGAAGGAGCCCGGTTCGAAATCTGATCTTCAAATCAAAATGGAGgtgattgaagaagaagaagaggaagatcTAGACGAGTCAGTAGGAAAACCCCAGGTGGCACGAAGAAAATCAACAGGGAAAAAAGCCGAAGCCGTAAACATCATCCCACAAATGATAATCAGCCGGTCTAACAAAACATACACTTGTTTGATATGCTCAGCAGAAGAAAAAGTACAAGGAGACGCAAGAACGCTTATAAACCACATGAAATCCGAACACAACATCCGCCTCTACATTTGTGATATGTGCGGTATGGAGTTCCTCAAGAGGACTGAAATGTCTGCTCATTTTGATGAGCACGTGGCGAATGAGGAGGGTGAATTCAGCTGTGAGACTTGCGGTCGGGTTTTCACTAATTTGCGTTTATATCGTGTCCACAAGCGCATGCACATGCCCCAACATAAGAATCATGTTTGTGAACAGTGCGGGAAAGCATTCTTaTCGAAAAACATGTTGGACGAACATATGAACATACATACTGGTGCTAGACCTTACAAATGTAACGAATGTGGTAAGGAGTTTGCGTCGAAATATTCGGCCAAAGCTCACGAAAAGATCCACGTGGAGCGACCCAGGCCGTATAAGTGTTCTCAGTGCTCGAAAGCTTTCATTACCGAAGCAAACCTTCTACAGCACGAAAGGACTCATAATGCCACAAAGTCCTTCCCCTGTCAAGTTTGTGGTAAATCCTTCAGTTCTGGACGAAACTTGGAGGTGCACTGTGTCATCCACACTGGTTACAAGCCTTTTGTGTGCCGAGTTTGCGGCAAAGCGTTTGCCCGTAAAGCAGAAATTCGGGACCACGAGAGAACCCATACTGGAGAGAAACCATATCAGTGCGAATTTTGCGGAGCCACTTTTGGACAAAGAAGTAACTTGCAATCTCATAAAAGAGCAACGCATTACGACGACAAGCGTTATCAGTGCATTGAGTGTGGCAAAGCATTCAAGAGAAGGAGACTTCTGGACTACCACATCAAAGCCGCTCATACGGGGGAGCGCCCCTACAAATGCCAAATATGCAGTGCTACGTTTATTTATCCTGAGCACTTCAAGAAGCACCGGAGGATACACACCGGTGAAAAACCTTATTTATGTGAGGTATGTGGCAAAGCTTTCAACAGCAGGGATAACAGAAACGCTCATAGGTTCGTTCACAGTGACAAAAAACCTTACGAATGTCTCGTCTGTGGGATGGGTTTCATGCGGAAGCCTCAGCTATACAATCACATGCAAACTCAgGGCCATATCAATGACACCATTGTCGTCAATCAGCCCcgtctcactaccgaagatgaGCTAATTTCTCAGGAAACGGAAGCTCAAATGGAGATGATCATTACAGATAACCAGGAGAAGTGGGCCACTGAACAAGTGATGGACGAGGCAGGAGAGCTCATAGCTGCTCAAGAAGGTGAAGGTGACACAAAAATGTACATTCGTGAATTGAAAGAGCATGTGATAATTCAGGGAAAAGAGGAGCACATCGATGAAAGTCAGTATTCAGAGGAAGTTGGCCACCTCATTATTGACGGACAGGTTCAATTCGCTGATGGTGAAACTCTTGAGCTGGACGCTGGAACAACGATAGGAGAAGGCATAGAAGGAACTCCCATTGTAGTTCCTGCAGGACATAGCGGTGAATTCACTGTGGAAGCTGGTGAagGTACAACTGTTGAAACACCAAACGGACCGGTCCGTCTCGTTCACATCTCACTTCCGGAGTCTGCTGACCCCAACCATCAAGGAGCGTGGTTCAACATCGTGCAGCAATAG
Protein Sequence
MTADSDKNQANIVCLICNASIGVSTRNNCPIFHFNVTSSEQPVANILSVVLGQEVRKEFVHSEIICKKCYKLCNEVDELQERLTEIKMELNNYYQKTLRKLEGIDDEEPEAPAPSPIVPKPSVTPVVKRGPGRPRKTPLSNRPVESVETSRSKDDVSDDDAEIVGVSDDDEIIEDDFIGVGMDDENDEDYIPENRQKGEAARKEPGSKSDLQIKMEVIEEEEEEDLDESVGKPQVARRKSTGKKAEAVNIIPQMIISRSNKTYTCLICSAEEKVQGDARTLINHMKSEHNIRLYICDMCGMEFLKRTEMSAHFDEHVANEEGEFSCETCGRVFTNLRLYRVHKRMHMPQHKNHVCEQCGKAFLSKNMLDEHMNIHTGARPYKCNECGKEFASKYSAKAHEKIHVERPRPYKCSQCSKAFITEANLLQHERTHNATKSFPCQVCGKSFSSGRNLEVHCVIHTGYKPFVCRVCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFGQRSNLQSHKRATHYDDKRYQCIECGKAFKRRRLLDYHIKAAHTGERPYKCQICSATFIYPEHFKKHRRIHTGEKPYLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGMGFMRKPQLYNHMQTQGHINDTIVVNQPRLTTEDELISQETEAQMEMIITDNQEKWATEQVMDEAGELIAAQEGEGDTKMYIRELKEHVIIQGKEEHIDESQYSEEVGHLIIDGQVQFADGETLELDAGTTIGEGIEGTPIVVPAGHSGEFTVEAGEGTTVETPNGPVRLVHISLPESADPNHQGAWFNIVQQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00145843;
90% Identity
iTF_00145843;
80% Identity
-