Llin028947.1
Basic Information
- Insect
- Lygus lineolaris
- Gene Symbol
- -
- Assembly
- GCA_030264115.1
- Location
- JAEMON010000017.1:485615-488020[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.19 18 6.8 0.1 3 23 308 328 306 328 0.97 2 17 0.35 34 5.9 0.6 14 23 337 346 336 346 0.94 3 17 2.4e-05 0.0023 19.0 0.9 3 23 354 374 352 374 0.98 4 17 0.00088 0.085 14.1 0.5 3 23 382 402 380 402 0.96 5 17 0.00012 0.011 16.9 1.5 3 23 410 430 408 430 0.97 6 17 0.0081 0.79 11.1 0.5 3 23 438 458 436 458 0.97 7 17 0.014 1.4 10.3 0.7 3 23 466 486 464 486 0.95 8 17 0.0018 0.18 13.1 0.9 3 23 494 514 492 514 0.97 9 17 8.8e-06 0.00086 20.4 0.5 1 23 520 542 520 542 0.99 10 17 0.00032 0.032 15.5 0.5 3 23 550 570 548 570 0.97 11 17 0.019 1.8 9.9 0.2 3 23 578 598 576 598 0.96 12 17 0.00012 0.011 16.9 4.2 3 23 606 626 604 626 0.98 13 17 0.00044 0.043 15.1 2.2 3 23 634 654 632 654 0.98 14 17 0.00036 0.035 15.3 2.2 3 23 662 682 660 682 0.98 15 17 0.00071 0.069 14.4 0.5 3 23 690 710 688 710 0.97 16 17 0.00016 0.015 16.5 0.7 3 23 746 766 744 766 0.98 17 17 0.00019 0.019 16.2 3.2 3 23 774 794 772 794 0.98
Sequence Information
- Coding Sequence
- ATGATTGGAGACGATCAGGTAATCGAGGAAGTGATGCAGGAAGGTGATTTGAAGAATGTTGAGATGTGCACGTGTTCGACTGCGCAAGGAGTCACAGCTACTGATAATTCTCAGCAGATAATCAAGGAAGAAATTATTACTGAAGAAGTTCAGAtcaaggaagaggaagaagatcaGATGAAGGAAGAGATGCAGGAAATTGATTTGATGAAAGTTGAGGGAATGGTGTGCACATGTTCGACTGCACAAGAAGTCACTGCTACTGATGATTCTCCATATGAAGAGCAGGTGATCAAGGAAGAAATTATTACTGAAGAAGATGAGATCAAGGAAGAGGATGTAGATTATATGATGCGTGGAAGTGATGGGAAGATTGATGGTGGACCAGTTCCAAGATATTCGACTGCGCAAGGAGTCACTGCTACTGATGATTCTTCATGTTATGGAGAGCAGATAATCAAGGAAGGAACTATTACTGATGAAGTTCAGAtcgaggaagaggaagaagatcaGATGATGCATGGAAGTGATGTAAAGATTGATGGTCGACCAGTTCCAAGATATTCGACTGTGCAAGGAGTCACTGCTACTGATAATTCTCTATGCGACGGAAAGCAGGTAATCAAGGAAGGAACTATTACTGATGAAGTTCAGAtcgacgaagaggaagaagatcaGATGATGCACGGAAGTGATGTGAAGATTGATGGTGGACCAGTTCCGAGATATTCGACTGCGCAAGGAGTCACTGCATCTGAGTCACTGGTTTCTCCATGTCGTGTCTTCTTGAGAAGATTGACTGAACACGAAATATTGAGATGGTCGCCTACAGGAAGTGCAAAGCGAGGAAGAAGTGACTCTGATGACTACAGAGTGGGAATATCGGGTGAGAAGCATCACAGGCTGGATGAGCCCTAcggctgtgatagttgtgattacagggctgGAAGTCGACGGGATCTAGAGCTTCATGTAAGAATTCATACTGGCGAGAGATCTGGATGTCTAAGTAATCTCAAGgatcacatgaggactcacactagAGAAAAGCCTTACGGCTGTGAtaattgtgattacagaacTTCACGGCCAGGACGACTGAAacgtcacatgaggactcatacTGGGGAGAAGCCTTATGGATGTgttagttgtgattacagggcttCACGGCAAGAAAAACTGAAgattcacatgaggactcatacTGGGGAGAAGCCTTATGgatgtgatagttgtgattacagggcttCACGGCAAGAACATCTGAAgattcacatgaggactcatacTGGGGAGAAGCCTTATGGATGTGAtaattgtgattacagagctgtaTCTCTGCCACACCTGAAGAGTCACTTGAGGattcacactggcgagaagccgtatggctgtgatagttgtgaatTCAGATCTGGATTTCTAAGTAATCTCAAGgatcacatgaggactcacactggagagaagccttaCGGCTGtaatagttgtgattacagagctgaaTCTCTGGCACACCTGAAgattcacatgaggactcatacGGGGGAGAAGCCTTATGtatgtgatagttgtgattacagggcttCACGGCAAGAACAACTGAAgattcacatgaggactcatacTGGGGAGAAGCCTTATGGATGTGATAGTTGCGATTACAGAGCTTCACGGCCAGGACGActgaagcgtcacatgaggactcacactggcgagaagccatatggctgtgatagttgcGATTACAGAGCTTCACAGACAGGACAACTGAAGCTTCACATGAAGGCTCACAccggcgagaagccctatggatgtcatagttgtgattacagatcCTCCCAGCAAAGTAAACTGAAGCGTCACATGAAGACTCACACCGGCGAAAAGCCTTATGGATGtcatagttgtgattacagaacctCCGAGCAAAGTCAACTGAAGCttcacatgatgactcacaccGGCGAGAAGCCTTATGGATGtcatagttgtgattacagggcttCACGGCAAGAAAAACTGAAgattcacatgaggactcatacGGGGGAGAAGCCTTATGgatgtgatagttgtgattacagggcttCACGGCAAGAACAAATGAAgattcacatgaggactcatacTGGGGAGAAGCCATATGGCTGTAATAGTTGTGAATTCAGATCTGGATGTCTAAGTAATCTCAAatgtcacatgaggactcacactggcgagaagccgtaTGGCTGTGAtaattgtgattacagagcttcaCAGACAGGACAACTGAAGCGTCACATGAAGACTCACACCGGCGAGAAGCCTTATGGATGtcatagttgtgattacagaacctCCGAGCGAAGTGAACTGAAGCGTCACATGAAAACTCACATTGGTGAGAAGCCCAACGTCTGA
- Protein Sequence
- MIGDDQVIEEVMQEGDLKNVEMCTCSTAQGVTATDNSQQIIKEEIITEEVQIKEEEEDQMKEEMQEIDLMKVEGMVCTCSTAQEVTATDDSPYEEQVIKEEIITEEDEIKEEDVDYMMRGSDGKIDGGPVPRYSTAQGVTATDDSSCYGEQIIKEGTITDEVQIEEEEEDQMMHGSDVKIDGRPVPRYSTVQGVTATDNSLCDGKQVIKEGTITDEVQIDEEEEDQMMHGSDVKIDGGPVPRYSTAQGVTASESLVSPCRVFLRRLTEHEILRWSPTGSAKRGRSDSDDYRVGISGEKHHRLDEPYGCDSCDYRAGSRRDLELHVRIHTGERSGCLSNLKDHMRTHTREKPYGCDNCDYRTSRPGRLKRHMRTHTGEKPYGCVSCDYRASRQEKLKIHMRTHTGEKPYGCDSCDYRASRQEHLKIHMRTHTGEKPYGCDNCDYRAVSLPHLKSHLRIHTGEKPYGCDSCEFRSGFLSNLKDHMRTHTGEKPYGCNSCDYRAESLAHLKIHMRTHTGEKPYVCDSCDYRASRQEQLKIHMRTHTGEKPYGCDSCDYRASRPGRLKRHMRTHTGEKPYGCDSCDYRASQTGQLKLHMKAHTGEKPYGCHSCDYRSSQQSKLKRHMKTHTGEKPYGCHSCDYRTSEQSQLKLHMMTHTGEKPYGCHSCDYRASRQEKLKIHMRTHTGEKPYGCDSCDYRASRQEQMKIHMRTHTGEKPYGCNSCEFRSGCLSNLKCHMRTHTGEKPYGCDNCDYRASQTGQLKRHMKTHTGEKPYGCHSCDYRTSERSELKRHMKTHIGEKPNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -