Basic Information

Insect: Lygus lineolaris
Gene Symbol: -
Assembly: GCA_030264115.1
Location: JAEMON010000017.1:738255-739805[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 3 3e+02 3.0 0.0 5 22 76 93 71 93 0.86

2 15 0.0007 0.068 14.4 0.7 1 23 114 136 114 136 0.97

3 15 2.3e-05 0.0022 19.1 1.0 1 23 142 164 142 164 0.98

4 15 7.8e-05 0.0076 17.4 0.9 1 23 170 192 170 192 0.97

5 15 0.00061 0.059 14.6 0.1 1 23 198 220 198 220 0.97

6 15 0.0016 0.16 13.3 0.2 1 23 226 248 226 248 0.97

7 15 0.00082 0.08 14.2 0.4 1 23 254 276 254 276 0.97

8 15 1.6e-05 0.0016 19.6 0.3 1 23 282 304 282 304 0.98

9 15 0.00017 0.017 16.4 0.1 1 23 310 332 310 332 0.97

10 15 1.7e-05 0.0017 19.5 0.2 1 23 338 360 338 360 0.98

11 15 6e-05 0.0058 17.8 1.7 1 23 366 388 366 388 0.99

12 15 1.7e-06 0.00017 22.6 2.4 1 23 394 416 394 416 0.98

13 15 3.4e-05 0.0034 18.5 0.8 1 23 422 444 422 444 0.98

14 15 2.1e-05 0.002 19.2 0.3 1 23 450 473 450 473 0.97

15 15 0.00088 0.085 14.1 0.3 1 23 479 501 479 501 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	3	3e+02	3.0	0.0	5	22	76	93	71	93	0.86
2	15	0.0007	0.068	14.4	0.7	1	23	114	136	114	136	0.97
3	15	2.3e-05	0.0022	19.1	1.0	1	23	142	164	142	164	0.98
4	15	7.8e-05	0.0076	17.4	0.9	1	23	170	192	170	192	0.97
5	15	0.00061	0.059	14.6	0.1	1	23	198	220	198	220	0.97
6	15	0.0016	0.16	13.3	0.2	1	23	226	248	226	248	0.97
7	15	0.00082	0.08	14.2	0.4	1	23	254	276	254	276	0.97
8	15	1.6e-05	0.0016	19.6	0.3	1	23	282	304	282	304	0.98
9	15	0.00017	0.017	16.4	0.1	1	23	310	332	310	332	0.97
10	15	1.7e-05	0.0017	19.5	0.2	1	23	338	360	338	360	0.98
11	15	6e-05	0.0058	17.8	1.7	1	23	366	388	366	388	0.99
12	15	1.7e-06	0.00017	22.6	2.4	1	23	394	416	394	416	0.98
13	15	3.4e-05	0.0034	18.5	0.8	1	23	422	444	422	444	0.98
14	15	2.1e-05	0.002	19.2	0.3	1	23	450	473	450	473	0.97
15	15	0.00088	0.085	14.1	0.3	1	23	479	501	479	501	0.97

Sequence Information

Coding Sequence: ATGGCGGACGAGATAGTGATCAAACATGAGGTAGTAATGGATGACGAGGTGGAAAGGGGAGAAGATCGGATGATCAAGGAAGAGATGATGGAGATTGAAGAGGATCAGATGATTGAAGACGAAGGAGTGATAATCAGAAATGATTGGTCAGATCAGATTGTGAAAGAGGAAGTAATTTTAAGTGATGGTTCTCTCCAAGCTGGCCAGAAGCCCTGCGCCGgcgatagttgtgattacagggctgGAAGATCAGATGATTTAAGAATACACAAAAATACACAGATTATGAAAGAAGAAGTAATGGTCAATGTTAGTTCTCTCCAAGATGGccagaagccctatgcctgtgacaGTTGTAATTACAGAGCTGGGAGACGTGTGCAATTAAAAAGACACATGATGAAACACACTGGaaagaagccctacgcctgtgatagttgtgactaCAGGGCCACACGGCTAGGACACCTGAAggctcacatgaggactcacactggggagaagccctacgcctgtgttAGTTGTGACTACAGGGCCACACGGCTAGGTCACCTGAAggctcacatgaggactcacactggggagaagccctatgcctgtggtAGTTGTGACTACAGGGCCACACAGCTAGGGAGCCTGAGGATTCACATGATGACGCACACTGGgcagaagccctatgcctgtgatagttgtgactaCAGGGCCTCATGGCAAGAACAACTGAGggctcacatgaggactcacactggggagaagccctacgcctgtgatagttgtgattacagggccacACAGCTAAAATCTCTGAAGGATCACATGATgtctcacactggggagaagccctatgcctgtgatattTGTGACTACAGGGCCACACGGCTAGGACACCTGAGGGCTCACATcatgactcacactggggaaaagccctacgcctgtgatagttgtgactaCAGGGCCGCAAACCAAGGAAACCTGAAGGCTCACATGATctctcacactggggagaagccctatgcctgtgatagttgtgactaCAGGGCCACACAGCTAGGAAACCTGAAggctcacatgaggactcacactggagagaggCCCTActcctgtgatagttgtgattacagagccacacAGCTAGGACACCTGAAGgatcacatgaggactcacactggagagaagccctacgctTGTGATATTTGTGATTACAGGACCACACATCCAGGACACCTGAAGgatcacatgaggactcacactggggagaagccctacgcctgtgatagttgCGATTACAGGGCCACACGGCCAGGACACCTGAAGGATCACATGAGgtctcacactggggagaagccctacgcttgtgatatttgtgattacagggccatACGGCCAGGACACCTGAGGGCTCACATGaagaggactcacactggggagaagccctatgcctgcgaTAGTTGTGATTTCAGGGCAAGAAGACCAGTTGAATTGAAAAGACACAGGATCACTCACCAATCACTGGCCGCCAGTTCAGATTTGGGTCCCTGTTCGAACAAGTAA
Protein Sequence: MADEIVIKHEVVMDDEVERGEDRMIKEEMMEIEEDQMIEDEGVIIRNDWSDQIVKEEVILSDGSLQAGQKPCAGDSCDYRAGRSDDLRIHKNTQIMKEEVMVNVSSLQDGQKPYACDSCNYRAGRRVQLKRHMMKHTGKKPYACDSCDYRATRLGHLKAHMRTHTGEKPYACVSCDYRATRLGHLKAHMRTHTGEKPYACGSCDYRATQLGSLRIHMMTHTGQKPYACDSCDYRASWQEQLRAHMRTHTGEKPYACDSCDYRATQLKSLKDHMMSHTGEKPYACDICDYRATRLGHLRAHIMTHTGEKPYACDSCDYRAANQGNLKAHMISHTGEKPYACDSCDYRATQLGNLKAHMRTHTGERPYSCDSCDYRATQLGHLKDHMRTHTGEKPYACDICDYRTTHPGHLKDHMRTHTGEKPYACDSCDYRATRPGHLKDHMRSHTGEKPYACDICDYRAIRPGHLRAHMKRTHTGEKPYACDSCDFRARRPVELKRHRITHQSLAASSDLGPCSNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00930600;
90% Identity: -
80% Identity: -