Llin028916.1
Basic Information
- Insect
- Lygus lineolaris
- Gene Symbol
- -
- Assembly
- GCA_030264115.1
- Location
- JAEMON010000017.1:68037-71783[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0031 0.31 12.4 4.6 1 23 39 61 39 61 0.99 2 22 0.00013 0.013 16.7 1.2 1 23 67 89 67 89 0.98 3 22 0.0013 0.12 13.6 0.7 1 23 95 117 95 117 0.98 4 22 4.7e-06 0.00046 21.3 2.2 1 23 123 145 123 145 0.98 5 22 0.021 2.1 9.8 0.4 1 23 151 174 151 174 0.96 6 22 0.0004 0.039 15.2 1.7 1 23 259 281 259 281 0.98 7 22 2.8e-05 0.0027 18.8 1.4 3 23 289 309 287 309 0.97 8 22 0.00087 0.085 14.1 4.4 1 23 315 337 315 337 0.98 9 22 0.00039 0.038 15.2 0.7 3 23 345 365 343 365 0.98 10 22 0.00051 0.05 14.8 1.0 1 23 371 393 371 393 0.98 11 22 0.0016 0.16 13.3 3.4 1 23 399 422 399 422 0.94 12 22 0.0049 0.48 11.8 7.7 2 23 595 616 594 616 0.96 13 22 0.5 49 5.4 1.1 3 23 624 644 622 644 0.83 14 22 2.7e-05 0.0026 18.9 1.2 3 23 652 672 650 672 0.98 15 22 0.00021 0.02 16.1 0.9 1 23 678 700 678 700 0.98 16 22 1.3e-05 0.0013 19.9 0.3 1 23 706 728 706 728 0.98 17 22 0.00086 0.084 14.1 0.4 1 23 734 756 734 756 0.98 18 22 0.0014 0.13 13.5 2.7 1 23 762 784 762 784 0.98 19 22 0.00014 0.014 16.6 0.7 1 23 790 812 790 812 0.99 20 22 0.00054 0.053 14.8 0.8 1 23 818 840 818 840 0.98 21 22 1.5e-05 0.0015 19.7 3.4 1 23 846 868 846 868 0.98 22 22 0.045 4.4 8.7 0.4 1 23 874 897 874 897 0.96
Sequence Information
- Coding Sequence
- ATGGCAGACATAGGTATGGCTGAAGAACACAATCAAGAATCTACACTCGATAGGACAGTCAGAGCAACGGTGACGATCAGGAATGAGGCGATGAGACACGAGGAAATGAAGCTTTATAGCTGTGATAAATGCGATTACAAATCCAAACGGCTAGGACATGTGAACCGCCACAAGAAGACGCACGCAGGTGTCAAGCCATATGCTTGTGATGTATGTGATTTCAAAACTACGCACCCAGGAAGTCTAATGAAACACACGAGGATGCATAcaggggagaagccctatgcttGTGATAGATGCGATTACAGAGCCACGAAGCTTGGAACGCTCAAGACACATCTGAGGACGCACACAGGCGAAAAGCCGTATGCCTGTGAAATATGTGATTACAGAACTACGCAGCGACCACATTTGAAGACCCACATGAGGACTCATACGGGTGAGAAGCCATTTGCTTGcaatagttgtgattacagatcCGCGCGGCTCGCACGTCTGAAATATCACATGATGGTTAGTCATCAAAAGGAGAATCAACCGTCGGGAGACTTGCCGAGTGATCAAGAAGTCATTGAAGAAGAAGTCACAATTAAAAAGGTGAAAATTGAAGTGATTGAAGATCAGATTTTCAGTGAAGAGCCTGAGCAGGACTGCTCAACTACCCAAGCTGGCACGTCTGCAGGAAAATTGACTGAAGATGACATCCGGATTGGGTTGAAACACGACATATCAGGAGATTCATACTACAAAGCTcgttattcaaatttgaggccGTACGACTGTTATCACTGTGATTACAAAGGCCGAGATCGAGGAGACTTGAAGATACACATGATGAAGCATACAGGGGAGAAGCCTTACGGGTGCGATCAATGTGATTACAGAACGACGCAGCAAGGACATTTGAATCGTCACATGATGGTTCACACCGGAGAAAAGCCGTATGCTTGTGATAGTTGTCATTATAGAACGAAGCATTTAGGAAGTTTGAAGATACACATGAGGACGCACACCGGTGAGAAGCCGTATGGATGCAATCTATGTGATTACAGAACGTCAACGCTAGGAAGTCTTAAGTCACACATGACCACCCACTCAGGCAATAAGCCGTATGCCTGTGATGTATGTGACTTCAGAGCTAAGCAACCAGGACATTTGAAGATTCACAAGAGAAGACACACTGGTGACAAGCCGTTTGCTTGTGATCGTTGTGATTACAGATCCGTGCGGCGACAACACCTTAAACGTCACATGATGTTTAGTCATAAGATGACACGCGTCAGCGAGAAGAGTGATTGTTGTGATCATAGATCGACACAGTTGGTGGACACAGGGGAGACGTCCACAAAGGGAGAGAACCCATTGGGAGACTTGAGAAATCTGAAACGTCACGTGATGTTCGTTCATAATATGAAGCACATTACCGAGAAACCCTACGCCTGTGATGACAGAACCACACAGTGTGTACATCTGAAAGATCACGCAGGGGAGACGTCCACGAAGGGAGAGAATCCATCGGGAGGCTTGAGTGATCCAGACGTGGCTGAAGAAGAAGTTATGATTAAGAAGGTGAAAATTGAAGTGATTGAAGATCAGATCAATGAAGAGGTGGAGAGTGGAGGGGAGATGATAATTGGAGATCGTGTAGTCGAAGAAGAGGTGATCAATGCGTACGGATGTTATTCGACTCTTCAAGCTGCAACTTGTGCAGGGTCGTCCATAGAAGGAGAAAACACAAACGAGCTATCAAGAGAAGCTGGACTGTCAAAAGAGTTGAAGCTCTACTGTTATCACTGTGATTACAACTGTCGGCATCGGAGTAATATAAAGAGACACATGATGATACATACTGGAGAGAAACCGTACGGTTGTGATCAATGCAGTTACAGATCTATGTGGCGAGCACATTTGAAGCGTCACATGATCGTTCACACTGCTGAGAAACCGTATGGATGCGATATTTGCGATTACAGAACAAAACACCCAGGAAGTCTAAAGTCACACATGAGGATGCATACGGGTGAGAAGCCGTATGCCTGCGATATTTGCGATTACAGAGCCAAGCAGATAACGCATCTGAAAGatcacatgatgactcacacaGGCGAGAAGCCGTACGCCTGCGATATTTGCGATTACAAAGCCACGAAGCCGGGAAATTTGAAGTATCACATGAGGACGCACACGGGCGACAAGCCGTACGCCTGTGACAGCTGCGATTACCGAACGAAAAAGCTTGGAAATCTCAAAGATCACGTGCGAattcacactggagagaagccgtACAGCTGCTACGTCTGCGATTTCAGAACCAAACAGCATGGAAGCCTGAAAGTACACATGATGAACCACACCGGCTACAAACCGTACACTTGCGACACGTGTGACTACAGAGCGGGGAACTCGAGGGATCTGACGCGTCACGTCAGGACTCATACGGGCGAAAAGCCGTACGCCTGTGACAGCTGTGACTACAAAACCACGCAGCTTGGATATTTGAAAATACACACGAGGACTCACACGGGAGAAAAGCCTTACGTCTGCGACATGTGCGATTTCAGATTTTCACGGCTCGGACATTTAAAACGTCACAAAAACTCACACATGGGTGAAAAGCCATACGCGTGTGACAGTTGTGACTACCGAGCTGGCACTCGAGATCGCCTTAAAAAACACGCAAGGAGTATGCACGGTGTTCCTCTCACTCAATCGACATAG
- Protein Sequence
- MADIGMAEEHNQESTLDRTVRATVTIRNEAMRHEEMKLYSCDKCDYKSKRLGHVNRHKKTHAGVKPYACDVCDFKTTHPGSLMKHTRMHTGEKPYACDRCDYRATKLGTLKTHLRTHTGEKPYACEICDYRTTQRPHLKTHMRTHTGEKPFACNSCDYRSARLARLKYHMMVSHQKENQPSGDLPSDQEVIEEEVTIKKVKIEVIEDQIFSEEPEQDCSTTQAGTSAGKLTEDDIRIGLKHDISGDSYYKARYSNLRPYDCYHCDYKGRDRGDLKIHMMKHTGEKPYGCDQCDYRTTQQGHLNRHMMVHTGEKPYACDSCHYRTKHLGSLKIHMRTHTGEKPYGCNLCDYRTSTLGSLKSHMTTHSGNKPYACDVCDFRAKQPGHLKIHKRRHTGDKPFACDRCDYRSVRRQHLKRHMMFSHKMTRVSEKSDCCDHRSTQLVDTGETSTKGENPLGDLRNLKRHVMFVHNMKHITEKPYACDDRTTQCVHLKDHAGETSTKGENPSGGLSDPDVAEEEVMIKKVKIEVIEDQINEEVESGGEMIIGDRVVEEEVINAYGCYSTLQAATCAGSSIEGENTNELSREAGLSKELKLYCYHCDYNCRHRSNIKRHMMIHTGEKPYGCDQCSYRSMWRAHLKRHMIVHTAEKPYGCDICDYRTKHPGSLKSHMRMHTGEKPYACDICDYRAKQITHLKDHMMTHTGEKPYACDICDYKATKPGNLKYHMRTHTGDKPYACDSCDYRTKKLGNLKDHVRIHTGEKPYSCYVCDFRTKQHGSLKVHMMNHTGYKPYTCDTCDYRAGNSRDLTRHVRTHTGEKPYACDSCDYKTTQLGYLKIHTRTHTGEKPYVCDMCDFRFSRLGHLKRHKNSHMGEKPYACDSCDYRAGTRDRLKKHARSMHGVPLTQST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -