Llin023163.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lygus lineolaris
Gene Symbol
-
Assembly
GCA_030264115.1
Location
JAEMON010000011.1:19636627-19640006[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 5.4e-05 0.0053 17.9 0.1 1 23 105 127 105 127 0.99
2 20 5.8e-05 0.0056 17.8 0.1 1 23 133 155 133 155 0.98
3 20 0.00014 0.014 16.6 0.1 1 23 161 183 161 183 0.98
4 20 6.8e-05 0.0067 17.6 1.2 1 23 189 211 189 211 0.98
5 20 0.00022 0.021 16.0 0.5 1 23 217 239 217 239 0.98
6 20 0.017 1.7 10.1 2.8 1 23 245 267 245 267 0.97
7 20 9.5e-06 0.00092 20.3 0.5 1 23 273 295 273 295 0.98
8 20 0.095 9.3 7.7 3.8 1 23 301 323 301 323 0.96
9 20 6.8e-05 0.0066 17.6 1.5 1 23 329 351 329 351 0.97
10 20 9.8e-05 0.0096 17.1 0.7 1 23 357 379 357 379 0.98
11 20 2.4e-05 0.0023 19.0 0.3 1 23 385 407 385 407 0.98
12 20 0.0057 0.55 11.6 0.5 1 23 413 435 413 435 0.98
13 20 0.00079 0.077 14.3 0.9 1 23 441 463 441 463 0.97
14 20 0.037 3.6 9.0 0.5 1 23 469 491 469 491 0.97
15 20 5.1e-05 0.005 18.0 2.1 1 23 497 519 497 519 0.98
16 20 0.25 25 6.4 6.0 1 23 525 547 525 547 0.96
17 20 7.3e-06 0.00071 20.7 3.4 1 23 553 575 553 575 0.99
18 20 0.00016 0.016 16.4 0.4 1 23 581 603 581 603 0.98
19 20 4e-06 0.00039 21.5 0.6 1 23 609 631 609 631 0.98
20 20 0.018 1.7 10.0 1.8 1 23 637 659 637 659 0.97

Sequence Information

Coding Sequence
ATGGCGGATGAAATAGTGATCAAAGAAGAGGTGATGGACGACGTGGTGGAAAGTGGAGCAGATTGGGTGGTCAAAGAAGAGGTGATGGATGACATGGTGGAAAGTGGAGAAGATTGGGTGATCAAAGAAGAGAATCAGATGATTGATGAAGAAGAAGTGATTAACAGGAATGATTGGTATGGTGAGATTATAAAAGAAGAAGTAGTAATCAGTGATAGTTCTCTCCAAGCTGCCTCAGCTGCTGATGTTAGTCAATGTGATGGTTTtgatgacaaaaaaatgaagctggAATGCAATACTGGCGAGAAGCCTTATGTATGCGATAGTTGTGGTTACAGGGCCGCACGGCTAGGAAGCCTGAAGGAGCACATGAGAACTCACACTGGCGATAAGTCTTATGCCTGTGATATTTGTGATTACGGAGCTGGATCCCTAAGTGGTCTCaagcgtcacatgaggactcacactggggagaagccttATGTATGCGATAGTTGTGGTTACAGGGCCGCACGGCTAGGAAGCCTGAAGGAGCACATGAGAATTcatactggggagaagccctatgcctgtgataggtgtgattacagggccacCCAGCAAGGACATCTGAAGGCTCACATGACGACTCATACTGAGGataagccctatgcctgtgatacaTGTGATTACAGGGCCACACGGCTAGAATACCTGAATAGTCACATCAAGACTCACTCCGGTTataagccctatgcctgtgatagatgtgattacaggACCACCCAGCAAGGACTTCTGAAGTGTCACATGACGACTCACaatggagagaagccctatgcctgtgatagatgtgattacagggccGCCCAGCAAGGAAATCTGAAGCGTCACATGAAGACTCATACTGAGGATAAGCCCCatgcctgtgatagatgtgattacagggccACACGGCTAGAACAGCTGAAGTGTCACAtcaggactcacactggggagaagccctatgcctgtaatAGATGTGATTACAGGACCACACAGCTGGAACTCCTGAAGCGTCACATGAAGAATCACACTGGGGAGAGGCCTTATGCCTGTAATAGTTGTGATTTTAGAGCCACACAGCTAGAACAGTTGAAGCGTCACATAAGGACTcatactggggagaagccctatgcctgtgatcaATGTGATTACAGGGCCGCCCAGCTGAAAAATCTGAAAGTGCACATGAGGACTCATACTGGGGataagccctatgcctgtgatagatgtgattacaggGGCAATTTGCTAAAATCACTCAAGGATCACATaaggactcacactggggataacccttatgcctgtgatagatgtgGTTACAGAGCTAGATCCCTAGATGGTCTCAAGCATCACATGAGTAGTCACGCAGAGGAGAaaccctatgcctgtgatagatgtgactACAGAGCAGGATCCCTAGATGGTCTCAAGCATCACCTGAGTAGTCACACTGCGGATAAGCCTTATGCCTGTGAtcgttgtgattacagagccacccagCAAGGACATCTGAAGCGTCACATGACGACTCATACTGAGGATAAGCCCCatgcctgtgatagatgtgattacagggccACACGGCTAGAACACCTGAAGTGTCACAtcaggactcacactggggatAAGCCCTATGTCTGTCATAGATGTGATTATAGGACCACACGGCTAGATCTCCTGAAGCGTCACATAAGGACTcatactggggagaagccctatgcctgtgatataTGTGATTACAGGGCCACCCAGCTGACATCTCTGAAAGAACACacgaggactcacactggggagaagccctatgcctgtaatAGTTGCGATTACAGGGCCTCACGTTCGGATAATCTGAAGGTGCACATGAGGACTCATACTGGGGATAAGCCCTATGCttgtgatagatgtgattacaggGGCAAACTGCTAAAATCACTCAAGCATCACATGATCAGTCACACTGGGGAGAAACCCTATGCCTGTGAAGGATGTGATTAG
Protein Sequence
MADEIVIKEEVMDDVVESGADWVVKEEVMDDMVESGEDWVIKEENQMIDEEEVINRNDWYGEIIKEEVVISDSSLQAASAADVSQCDGFDDKKMKLECNTGEKPYVCDSCGYRAARLGSLKEHMRTHTGDKSYACDICDYGAGSLSGLKRHMRTHTGEKPYVCDSCGYRAARLGSLKEHMRIHTGEKPYACDRCDYRATQQGHLKAHMTTHTEDKPYACDTCDYRATRLEYLNSHIKTHSGYKPYACDRCDYRTTQQGLLKCHMTTHNGEKPYACDRCDYRAAQQGNLKRHMKTHTEDKPHACDRCDYRATRLEQLKCHIRTHTGEKPYACNRCDYRTTQLELLKRHMKNHTGERPYACNSCDFRATQLEQLKRHIRTHTGEKPYACDQCDYRAAQLKNLKVHMRTHTGDKPYACDRCDYRGNLLKSLKDHIRTHTGDNPYACDRCGYRARSLDGLKHHMSSHAEEKPYACDRCDYRAGSLDGLKHHLSSHTADKPYACDRCDYRATQQGHLKRHMTTHTEDKPHACDRCDYRATRLEHLKCHIRTHTGDKPYVCHRCDYRTTRLDLLKRHIRTHTGEKPYACDICDYRATQLTSLKEHTRTHTGEKPYACNSCDYRASRSDNLKVHMRTHTGDKPYACDRCDYRGKLLKSLKHHMISHTGEKPYACEGCD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-