Llin023165.1
Basic Information
- Insect
- Lygus lineolaris
- Gene Symbol
- -
- Assembly
- GCA_030264115.1
- Location
- JAEMON010000011.1:19646424-19648226[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0023 0.23 12.8 1.7 2 23 73 94 72 94 0.95 2 18 0.0021 0.21 12.9 0.3 1 20 100 119 100 122 0.93 3 18 8.1e-05 0.0079 17.4 0.8 1 23 128 150 128 150 0.98 4 18 0.00027 0.026 15.7 0.5 1 23 156 178 156 178 0.98 5 18 0.0006 0.058 14.6 0.4 1 23 184 206 184 206 0.97 6 18 5e-05 0.0049 18.0 0.4 1 23 212 234 212 234 0.97 7 18 0.0004 0.039 15.2 0.5 1 23 240 262 240 262 0.97 8 18 4.7e-06 0.00045 21.3 1.9 1 23 268 290 268 290 0.98 9 18 0.00029 0.029 15.6 0.4 1 23 296 318 296 318 0.98 10 18 2e-05 0.0019 19.3 1.6 1 23 324 346 324 346 0.98 11 18 8.1e-05 0.0079 17.4 0.8 1 23 352 374 352 374 0.98 12 18 4.4e-06 0.00042 21.4 1.0 1 23 380 402 380 402 0.98 13 18 0.00093 0.091 14.0 0.1 1 23 408 430 408 430 0.97 14 18 0.19 19 6.7 0.2 8 23 443 458 442 458 0.88 15 18 0.00091 0.088 14.1 0.2 1 23 464 486 464 486 0.97 16 18 6.7e-05 0.0065 17.6 1.5 1 23 492 514 492 514 0.97 17 18 0.00011 0.011 17.0 0.5 1 23 520 542 520 542 0.98 18 18 0.00028 0.028 15.7 0.3 1 23 548 570 548 570 0.97
Sequence Information
- Coding Sequence
- ATGGCGGACGAAATAGTGATCAAACATGAGGTAGTTGTAATGGATGACGATGTGGAAAGTGGAGAAGATCGGATGATCAAAGAAGagatgaagattgaagaggaTCAGATgattgaagaagaaggagtGATTGCCAGAAATGATTGGTCAGATCAGATTGTGAAAGAGGAAGTAATGTTAAGTGATTGTTCTCCCCAAGCTGGCCAGAAGACCTgcgcctgtgatagttgtgatttcAGGGCTGCACGGCAAGATAAACTGAAGAatcacatgatgactcacactgaTGTGAAGCCCTACGCCTGCGATAGTTGTGACTACAGGGCCACACGGCAAGAACAACTGAAGGCTCACATGTGGAGACACACTGGGGAAAAGCCATATGCCTGCGATAGTTGTGACTACAGGGCTGCACGGAAAGATAAGCTCAAGAATCACATGAGGAGACACACTGGGGAAAAGCCCTATGCCTGCAATAGTTGTGACTACAGGGCCACACGGCTAGAATACCTGAAGGatcacatgatgactcacactggggaaatgccctacgcctgtgatagttgtgattacaggacCGCCCGGCAAAGAGACCTGAAGGCTCACTCgatgactcacactggcgaaatgccctacgcctgtgatagttgtgattacaggacTGCCCGGCAAAGAGACCTGAAGGCTCACATGATGTCTCACACTGGGGAAAAGCCCTtcgcctgtgatagttgtgactaCAGGGCCACACGACTAAAATCTCTGAAGGCTCACATGATGTCTCACACTGGGGAAAAGCCCTACGCCTGTACTAGTTGTGACTACAGGACCACACGGCAAGGAAACCTGAAGACTCACATGAGGAGACACACTGGGGAAAAGCCCTATGCCTGCGATAGTTGTGATTTCAGGGCCGCACGGCAAGATAAGCTGAAGAatcacatgatgactcacactgaGGTAAAGCCCTATGCATGCGATAGTTGTGACTACAGGGCCACACGGCAAGAACACCTGAAGGCTCACATGAGGAGACACACTGGGGAAAAGCCCTATGCCTGCGATAGTTGTGACTACAGGGCTGCACGGAAAGATAAGCTGAAGAATCACATGAGGAGACACACTGGGGAAAAGCCCTATGCCTGCGATAGTTGTGACTACAGGACCACACGGCAAGAACAACTGAAGGCTCACATGAGGAGACACACTGGGGAAAAGCCCTATGCCTGCGATAGTTGTGACTACAGGGCCACACGGCCAGAACAACTGACGGCTCACTCgatgactcacactggcgaaATGCCCTACGCCTGTTATAGTAGTGATTACAGGACTGCCCGGCAAAGAGACCTGAAGGCTCACATGATGTCTCACACTGGGGAAAAGCCCTtcgcctgtgatagttgtgactaCAGGGCCACACGACTAGTATATCTGAAGGCTCACATGATGTCTCATACTGGGgaaaagccctatgcctgtgatagttgtgactaCAGGGTCACACGGCAAGAACACCTGAAGACTCACATGGGGACACACACTGGGGAAAAGCCCTATGCCTGCGATACTTGTGATTTCAGGGCCCCACGGCAAGATAAGCTGAAGAatcacatgatgactcacactgaGTTGAAGCCCTTTGCCTGCGATAGTTGTGACTACAGGGCAAGAAGACCAGCTGATTTGAAAAGACACAGGATCACTCACCAATCACGTGCCGCCAGTTCAGACGTGGATCCCGACGGGCAAATTCCCCTTGTAGATGTTGTGCAATCAACGGGGACTGATTATCGGCAATGA
- Protein Sequence
- MADEIVIKHEVVVMDDDVESGEDRMIKEEMKIEEDQMIEEEGVIARNDWSDQIVKEEVMLSDCSPQAGQKTCACDSCDFRAARQDKLKNHMMTHTDVKPYACDSCDYRATRQEQLKAHMWRHTGEKPYACDSCDYRAARKDKLKNHMRRHTGEKPYACNSCDYRATRLEYLKDHMMTHTGEMPYACDSCDYRTARQRDLKAHSMTHTGEMPYACDSCDYRTARQRDLKAHMMSHTGEKPFACDSCDYRATRLKSLKAHMMSHTGEKPYACTSCDYRTTRQGNLKTHMRRHTGEKPYACDSCDFRAARQDKLKNHMMTHTEVKPYACDSCDYRATRQEHLKAHMRRHTGEKPYACDSCDYRAARKDKLKNHMRRHTGEKPYACDSCDYRTTRQEQLKAHMRRHTGEKPYACDSCDYRATRPEQLTAHSMTHTGEMPYACYSSDYRTARQRDLKAHMMSHTGEKPFACDSCDYRATRLVYLKAHMMSHTGEKPYACDSCDYRVTRQEHLKTHMGTHTGEKPYACDTCDFRAPRQDKLKNHMMTHTELKPFACDSCDYRARRPADLKRHRITHQSRAASSDVDPDGQIPLVDVVQSTGTDYRQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -