Llin026446.1
Basic Information
- Insect
- Lygus lineolaris
- Gene Symbol
- -
- Assembly
- GCA_030264115.1
- Location
- JAEMON010000014.1:18220763-18223189[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.014 1.4 10.3 0.2 1 23 57 79 57 79 0.97 2 23 3.7e-05 0.0036 18.5 1.8 1 23 85 107 85 107 0.98 3 23 3.6e-05 0.0035 18.5 1.6 1 23 113 135 113 135 0.98 4 23 8.4e-05 0.0082 17.3 1.1 1 23 141 163 141 163 0.95 5 23 0.00046 0.044 15.0 3.2 1 23 169 191 169 191 0.98 6 23 0.00025 0.024 15.8 0.1 1 23 197 219 197 219 0.98 7 23 0.00064 0.062 14.6 0.0 1 21 225 245 225 246 0.95 8 23 7.1e-05 0.007 17.5 1.5 1 23 271 293 271 293 0.98 9 23 0.0023 0.23 12.8 0.2 1 23 299 321 299 321 0.98 10 23 0.00041 0.04 15.2 0.0 1 22 327 348 327 348 0.96 11 23 0.00085 0.083 14.2 0.2 1 23 430 452 430 452 0.98 12 23 0.00013 0.013 16.7 1.0 1 23 458 480 458 480 0.98 13 23 0.00041 0.04 15.1 3.0 1 23 486 508 486 508 0.98 14 23 3e-05 0.0029 18.7 1.0 1 23 514 536 514 536 0.98 15 23 0.022 2.2 9.7 2.4 1 23 542 564 542 564 0.94 16 23 6.1e-05 0.0059 17.8 1.5 1 23 570 592 570 592 0.99 17 23 0.00054 0.053 14.8 0.1 1 23 598 620 598 620 0.98 18 23 0.00033 0.032 15.5 0.4 1 21 626 646 626 647 0.95 19 23 0.0049 0.48 11.8 2.1 1 23 663 685 663 685 0.96 20 23 0.0078 0.76 11.1 1.1 1 23 691 713 691 713 0.96 21 23 0.0012 0.11 13.7 0.6 1 23 719 741 719 741 0.97 22 23 3.4e-05 0.0033 18.6 1.4 1 23 747 769 747 769 0.98 23 23 0.0024 0.23 12.8 1.4 1 23 775 797 775 797 0.97
Sequence Information
- Coding Sequence
- ATGATCAAGCAAGAAATTATGTCGGATGATGAAGATGTGCGAGTGATTGAAGAAGAGTTGATGATAAAACAAGAAATGGTGTCGGAAGCCGAAGAAGAGATGATAATCGGTGAATATCATGAAGACAACCTTTCAACTACCTCCAATGATGATCAATTGGAAAAGTCTTATGCCTGTCGtatttgtgattacagaaccgATCAGAAGGGACGTCTGGAGGGTCACTTGAATATTCACTCCGGCGAGGAGTCCTATTCCTGTAATAATTGCAATTACATAACTGGACATCAAAGTAATCTACAAACACACATGATGATTCACACAGGCGAAAAACCATATATGTGTTACTATTGTGATTACAAATCTATACGGCAAGTTAATCTAAAAACTCATATGAAGATTCACACTGGGgaaaagccctatgcctgtgatagttgtaaACGCAGATTTAGGAATCAAGCGGATCTAAAGAAACACAAGGTTATTCACACTGTTGAGAAGCCATTTTCGTGTGATTTTTGTGATTACAAAACTGTACGTGAAGAACATCTGAAGGAACACACtaggactcacactggggagaggCCTTATCCCTGTGATAGTTGCGATTACAAAGCCATAACTAAAGGAGCTCTGACTAGACATATGCAGATTCACTCTGGGGATAAGCCGTATGCCTGTCCCGAATGTGATTACGCCTCTGCAACTAAAGATGGCCTATCGAAGCACCTGAGGAACAAAAAGAAGAACCAGCCAGGTTACGTAGTTACGGAGCAAGGTATTGTGGAAATTCGAACTGGTGAGAAGCCGTATGCGTGTGATTTTTGTGATTACAAAACAGTTCGTGAAGAACATCTGAAGGAACACAtcaggactcacactggggaaaGGCCGTATCCCTGTGATAGCTGCGATTACAGAGCCATAACTAAAGGAGCTCTGACGAGACACAAACAGATTCACTCTGGGGATAAGCCGTATGCCTGTCCCGAATGTGATTACGCCTCTGCAACTAAAGATGGCCTAGCAAAGCAcctgaggaagaagaagaagaagcccaATTACGAAGTTGAGGAGCAATGTAATGTGGAAATTCACACTGCCAAGAAGCCCTGTGCCAGTGATTACAAAGCTACAACTCGATATAATGAAGATGAGCGAGTGATCGGAGAAGAGTTGATAATAAAACAAGAAACGGTGTCGGAAGCTGAAGAAGAGATGATAATCGGTGAAGATCAGGACGACAACCTTTCAACTACCGCCAATGATGATGAATTGGAGAAGTCTTATGCCTGTCgtatttgtgattacagagccaagCAGAAGGGACGTCTTGAGGCTCACTTGAGGATTCACTCTGGCAAAAAGCCTTATGCCTGTTATCATTGTGATTATAAATCCGTCACTAGAGGAGGCCTGAAGGTACACATGAGGATTCACACGGGCGAAAAGCCATATTCCTGTAATAGTTGCAATTACAAATCTGGACATCGAAGTAATCTACAAACACACATGATGATTCACACAGGCGAAAAACCATATATGTGTTACATTTGTGATTACAAATCTATACGGCAAGTTAATCTAAAAACTCATATGAAAATTCACACTGGGgaaaagccctatgcctgtgattgTTGTAAAAGCAGATTTAGTAATCAAGCTGATCTAAAAAAACACAAGATCATTCACACTGGTGGTAAGCCTTATGAATGTGATTCTTGCGATTACAAAACTGTACGGGAAGAACATCTGAAGGAACACAtcaggactcacactggggagaggCCGTATCCCTGTGATAGTTGCGATTACAGAGCCATAACTAAAGGAGCTCTGACGAGACACATACAGATTCACTCTGGGGATAAGCCGTACGCCTGTCACGAATGCGATTACACTTCTGCAACCAAAGATGGCCTATCTAAGCACCtgaggaacaaaaataaatatggaaATGTGGAAATTCACACTGCCAAGAAGCCACATGCCTGCGATCGTTGTGATTACAAAGCTAGGACTCGATATGATCTGGAAAAACACAAGATAACTCACACTGAGGTGAAGCCATTTGCGTGTGAAATGTGTGGATACAAGGCACGGACACGGAGACATATGAAAATACACGAGATGATTCACAGTGGGGAAAAGCCGTATGCCTGCGACGTTTGCGATTACAGAGCCACACAGATAGCACATCTGAAGAGGCACAAAATGATTCACAGTGGGGAGAAGCCATTTCCCTGTGATCATTGTGATTACAGCGCTCGAAATCGAAGTGATCTGAAAAATCACGAGATGACTCACACCGGCGAGAAGCCATATGCGTGTGGTAGTTGTAGTTACAGGGCCTCTAGACAATTGTACTTGAAGAAACACATGAAGACTCACATTGGGAAGAAGCCATATGTTATTACTGTGAGCTGA
- Protein Sequence
- MIKQEIMSDDEDVRVIEEELMIKQEMVSEAEEEMIIGEYHEDNLSTTSNDDQLEKSYACRICDYRTDQKGRLEGHLNIHSGEESYSCNNCNYITGHQSNLQTHMMIHTGEKPYMCYYCDYKSIRQVNLKTHMKIHTGEKPYACDSCKRRFRNQADLKKHKVIHTVEKPFSCDFCDYKTVREEHLKEHTRTHTGERPYPCDSCDYKAITKGALTRHMQIHSGDKPYACPECDYASATKDGLSKHLRNKKKNQPGYVVTEQGIVEIRTGEKPYACDFCDYKTVREEHLKEHIRTHTGERPYPCDSCDYRAITKGALTRHKQIHSGDKPYACPECDYASATKDGLAKHLRKKKKKPNYEVEEQCNVEIHTAKKPCASDYKATTRYNEDERVIGEELIIKQETVSEAEEEMIIGEDQDDNLSTTANDDELEKSYACRICDYRAKQKGRLEAHLRIHSGKKPYACYHCDYKSVTRGGLKVHMRIHTGEKPYSCNSCNYKSGHRSNLQTHMMIHTGEKPYMCYICDYKSIRQVNLKTHMKIHTGEKPYACDCCKSRFSNQADLKKHKIIHTGGKPYECDSCDYKTVREEHLKEHIRTHTGERPYPCDSCDYRAITKGALTRHIQIHSGDKPYACHECDYTSATKDGLSKHLRNKNKYGNVEIHTAKKPHACDRCDYKARTRYDLEKHKITHTEVKPFACEMCGYKARTRRHMKIHEMIHSGEKPYACDVCDYRATQIAHLKRHKMIHSGEKPFPCDHCDYSARNRSDLKNHEMTHTGEKPYACGSCSYRASRQLYLKKHMKTHIGKKPYVITVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -