Llin029422.1
Basic Information
- Insect
- Lygus lineolaris
- Gene Symbol
- -
- Assembly
- GCA_030264115.1
- Location
- JAEMON010000614.1:246-2337[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.6e-08 3.5e-05 24.2 0.1 4 38 17 50 14 55 0.93
Sequence Information
- Coding Sequence
- ATGCCTcggagcaaaaataatgtaaatcgACCACCTGTTGACAAACAAGCTTTGGCCAGAGCTATTGCCGAAGTGAAAAAAGGTATCAGTATCAATGCAGCCGCCAAAGGAAATGGCATTGCCAGAAGGACATTGCAGAGGCACTACAAAAATATGTCACCATCGGAAGAATTCAAGTACGAAAACAAATGTGCCCATAAAAAGATATTCACTGAACAACAAGAAAACGACCTGGTCGATTACTTGCTGCTCTGCAGCAAACTGATGCATGGATTAACCCGAAAAGTGTTTGCGAAATTCGCCTATGATTTCGCTAAACGAAATGGAAAACCAGTCCCTGAGAGTTGGGAGGAGAATGGTAGAGCAGGGCGGCGTTGGCTCAATGACTTCATAAGACGACATAATCGATTGACCTTGCGAACACCTCAGCCAACAAGCATTGGGAGAGCCACTTGTTTCAATAAACCGGTGGTTGAATCTTATTTCCTCAACTTAAGCGCACTCTTTGATAAATATGAGTTCCATCCAGGTGACATATATAATGTGGACGAATCAGGCCTCTCGACTGTACAAGCCCCTCCAAAAGTCATAGCTGAAAAAGGGGCTCGGACCGTGGGTGCTATCTCTTCGGCCGAAAGAGGCACAACTGTCACGTTAATTGCTACCATAAATGTATTGGGCAATACGATTCCCCCATTGCTTGTATTTCCTAGGGTCAGGTTCCAGGATACAATGCTCTTCGGTGCCCCACCTGGGACCATTGGTGTCGCTAATCCATCAGGATGGTCAAATTCCAGCATTTTTATGGACTACATGAAGCACTTGGTCAGACAAGCTCGCCCTTCTAAGGAAAAGCCTATATTATTGCTCTTGGACAATCACGAGAGCCATTTATCGGTGGACGTAATTGATTTTGCCAAACAACATGGAGTAGTGCTGTTTACGTTCCCCCCTCACACTACCCATAAATTGCAACCGTTAGACCGTGGCGTTTTTGGGCCATTCAAGAAGCATTTTAACCATCAGCTGACGTTGTGGATGCAAAACAACCCCGGAAAACCTGTGACCATTCATCACATTGCGATGATTCTTGGTGCCTCCTACCCCTTGGGATTCACTGCAGGAAACATCCAGGGTGGTTTTCGTGGCTCCGGTATCTACCCAATAAATCCTTATGTTTTTACTGAGACTGATTTTCTCCCATCTGCCATCACTGATCGTCCTACTCCAAGCAGCAGCAGCATGGCCAGCGAGAGTGCTGCTGATCCATCCGTGGCAACAATTCTATCAAATTACCAGCAAATCAACAAAGTTGCGGATTCACAATACATGCCAGGTCCCTCTAATTATGTAAGCCCAAAAGAAGTGCGCCCACTACCCAAGGCCCAACACCGGGATCCAAAAAAGGGAGGACGCCGACTTGGTAAGTCTCGTATCCTGACTGATACTCCAGAGAAAATGGAGATTGAAGCCCAATCAGCTGtaagaaaatcattaaaaaccaGGAAAACTCAACGTGAGCTGTTCAAAACGTCAAAAGTTCCtgcaaagaaaaagaaagttgtGGAAGAGTCGTCTGAAGATGGTGAATCAGattGGGATCCTGACTCTTCTGAAAGCGAGCTTGATTTTGACAAAGTATCTTCAGGAATcctgaatgatgatgatgacgactaCAATGAAAATGCCATTGGTTGGGATGAAAAATCTCCTACCAACAACGTGGGGAAATGGGTCCTGGTGAAATTCTTGTgctcaaatggtcaaaaattttaTGTTGGGCAAGTGAGGGGCATCTATGATAATTTACAAGCAACTGTAAAGTTCGCCAGGAAAAAAGGGTCAATTTTTATCTGGCCCAATGTCGAGGACGTGTCCCAAGTAAGAAtttccgattttgaaaaaattcttccCTCTCCAAAAATTGGAAGGAGAGGAGAGATAACGTTTGATCTCTCATTCCATGGACTTCACGTAATGTGA
- Protein Sequence
- MPRSKNNVNRPPVDKQALARAIAEVKKGISINAAAKGNGIARRTLQRHYKNMSPSEEFKYENKCAHKKIFTEQQENDLVDYLLLCSKLMHGLTRKVFAKFAYDFAKRNGKPVPESWEENGRAGRRWLNDFIRRHNRLTLRTPQPTSIGRATCFNKPVVESYFLNLSALFDKYEFHPGDIYNVDESGLSTVQAPPKVIAEKGARTVGAISSAERGTTVTLIATINVLGNTIPPLLVFPRVRFQDTMLFGAPPGTIGVANPSGWSNSSIFMDYMKHLVRQARPSKEKPILLLLDNHESHLSVDVIDFAKQHGVVLFTFPPHTTHKLQPLDRGVFGPFKKHFNHQLTLWMQNNPGKPVTIHHIAMILGASYPLGFTAGNIQGGFRGSGIYPINPYVFTETDFLPSAITDRPTPSSSSMASESAADPSVATILSNYQQINKVADSQYMPGPSNYVSPKEVRPLPKAQHRDPKKGGRRLGKSRILTDTPEKMEIEAQSAVRKSLKTRKTQRELFKTSKVPAKKKKVVEESSEDGESDWDPDSSESELDFDKVSSGILNDDDDDYNENAIGWDEKSPTNNVGKWVLVKFLCSNGQKFYVGQVRGIYDNLQATVKFARKKGSIFIWPNVEDVSQVRISDFEKILPSPKIGRRGEITFDLSFHGLHVM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -