Llin008581.1
Basic Information
- Insect
- Lygus lineolaris
- Gene Symbol
- -
- Assembly
- GCA_030264115.1
- Location
- JAEMON010000003.1:1458888-1459475[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-08 1.2e-05 25.6 0.0 1 40 12 51 12 56 0.91 2 2 8 6.1e+03 -2.2 0.0 17 23 136 142 132 143 0.79
Sequence Information
- Coding Sequence
- ATGCCTGCTACGAAGGGCTCATTTCTGAAGTATTCAGAAGATGCCATGTTAGCTGCCGTGGAAAACGTTCGCACCTTCAAAACACCGATCAGAACGGCTGCAAAGACATTTGGAGTCCCAAGAATCACTTTAAAATACAAAGTTGAGGGAAAATGTCCGATTGCAAGAAGAATGGGGCCTGCCTCCATCCTCACCAAAGAAGAAGAGACTGAAGTATGCAGGTGGGTGGAGAGAATGGCGAAAGCCGGTTTCCCAGTGACGGTAACTCAGCTAACCATCAGTGTGGAGAAGGTCATCAAAGAAATGAATCGTACAAACCCTTTTAAAGACTGCAGACCTGGCAAAACTTGGGTCAAAAGTTTCCTCCGAAGAAATCCCGATATTTCGAAAAGGATTTCCCAAAACCTCACTATTTCACGTGCAGCCATCACAAGTGCTAATATACTAAATTGGTTTTCTGAGGTCCATACCTACTTAAAGGAAAACAACTATGATACGAGCATATCAAGTCATTCAGATGTAGAGAGCAACACTACGGATGAAACAAAACGCCCTTCCGCGCTTACCTGCCGTCGGATTTATCCATAA
- Protein Sequence
- MPATKGSFLKYSEDAMLAAVENVRTFKTPIRTAAKTFGVPRITLKYKVEGKCPIARRMGPASILTKEEETEVCRWVERMAKAGFPVTVTQLTISVEKVIKEMNRTNPFKDCRPGKTWVKSFLRRNPDISKRISQNLTISRAAITSANILNWFSEVHTYLKENNYDTSISSHSDVESNTTDETKRPSALTCRRIYP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -