Llin028298.1
Basic Information
- Insect
- Lygus lineolaris
- Gene Symbol
- -
- Assembly
- GCA_030264115.1
- Location
- JAEMON010000016.1:9775912-9776292[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.1e-14 5.4e-11 42.8 0.0 5 41 1 38 1 42 0.92 2 2 6.2 4.8e+03 -1.8 0.0 34 43 107 116 106 117 0.82
Sequence Information
- Coding Sequence
- ATGAAAGAGGCGATCGCAGCAGTAAGAAAGGGAGAAATGGCTGTTTTGCGTGCCTCTAAAGTTTTTGGCGTTCCAAGGTCCACTTTGCAATGCAAGGTGAAAAGCAAAGAAACGAATCTAGAGAAATTGGTCGACCCTCGACGAGGACCACGACCTTATCTCTCTGAAGATCTAGAAGAGGAATTAGTGCAATTCGCTTGCGACAACGATGGAGCCACAGCTACGGAAATTAAGAAAATGGCTTTTCAGCTGAGCGAAAAAATGGGACTACATCACCCTTTCAACAGAGATGACGGGACGGCCGGACGAAAATGGTTCCAATCCTTCAAAAAACGACACCCAGAGGTCGCTGTAAGAAGAAAACGCCGACCATTTACCTAA
- Protein Sequence
- MKEAIAAVRKGEMAVLRASKVFGVPRSTLQCKVKSKETNLEKLVDPRRGPRPYLSEDLEEELVQFACDNDGATATEIKKMAFQLSEKMGLHHPFNRDDGTAGRKWFQSFKKRHPEVAVRRKRRPFT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -