Ltri010608.1
Basic Information
- Insect
- Lydus trimaculatus
- Gene Symbol
- -
- Assembly
- GCA_037414755.1
- Location
- JAZBGY010002779.1:6629-8129[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.2 1.2e+02 3.1 0.2 3 23 117 135 116 135 0.73 2 11 0.012 0.67 10.2 1.5 2 21 141 160 140 161 0.93 3 11 6.9e-05 0.0039 17.3 2.2 1 23 173 195 173 195 0.98 4 11 0.0065 0.37 11.0 2.5 1 20 256 275 256 276 0.96 5 11 0.99 56 4.2 0.2 2 23 280 300 279 300 0.91 6 11 0.014 0.8 10.0 0.5 3 23 307 328 305 328 0.93 7 11 0.019 1 9.6 7.3 1 23 333 355 333 355 0.95 8 11 2e-05 0.0011 19.0 3.7 1 23 361 384 361 384 0.95 9 11 0.00037 0.021 15.0 3.3 1 23 390 412 390 412 0.96 10 11 2e-06 0.00011 22.1 0.9 1 23 418 441 418 441 0.98 11 11 0.00012 0.0068 16.5 2.2 2 23 450 471 449 471 0.95
Sequence Information
- Coding Sequence
- ATGGTGAAAAAAACTTGTAGGTTATGTTTGGGTACAGCTCCAATTTGTTTTTCGCTATTAACACCggatatttcaaaaatgttaGAATCTTTAACATCAATTAAGATAAATGAAGATGACGAATTATCAACAGTAAGTTGTAcgaaatgtttattaaatgtaaaattagcattcaatatacaacaaaatataataaaaattgacacgaaattacgtaataatcatttaaacaataaagaaataaagagGGAGATTTGTGAAGTGATGCTTGAAGAGAAAgatgaaatattacaaacaccaacacaaacaacaacaacaactgaatcATTGGcgatttgtgataatttatgtaaaatatgtgGCATCtctgttgttgataatatgatGAATCATATACAAGAACATTTCCAATCTGTACAGgaatgtaataattgtaaacaaaattttaaaaatatccacGAATACcgacaacatttattaaattgtcaacaacaaaacgttgAAAAAAAGGATTCTTATACGTGTGAGAAATGTGGCAGTAAATTCCGCTATGAATCTTTGTATAATTTACATATGAAGAAtcatgaaaatgatgattatgttgatagtgatgatggtggtggtggtggtggtgatgatgataaaactaatgatgatgatggtaacgatgatgatgatgataataacgaaGTTGAAGATGGTGAAACTGGTGAGAAACTCTTAAATGGTCAATATTTTCGTGTTGTAATCAACGATAAAATCAGTTATCgttgtaatgtttgtttaaGAGTTTATAAATCAcgtaaacaatttgtaaaacatACACATGATCGTAAAAGATGTCCAGTATGTAATGCAAATATTACTGTTAGTAATTGGAAGAAACATGTTAGTAATCACAGTTCAGGACCTCAAATTTGTGAATTATGCGGTGCAACATTACGAAGTCTTGAAAGTTTACGTGGTCATATGACACATACACATAGTAAACAACGTTATAAATGTGAAGAATGCAATCTAACATTTAAAgtacattataattatttgaaacattgTAAATCACATACTGGCGAAAAAGATCATATTTGTGATCAATGCGGTCGTGGTTTTATCactaaacattatttaaataaacatataaaattgaaacatttaaaattacgtccacatatttgtgaattttgtaAACGTGGATTTTCTAGTAAGAATGCATTAAGTACACATCGTCGACAACATACAAATGAAACACCATATCGTTGTGAGGTGTGTGGTGAGGGTTTTAGACAGAATGTTTCATTACGTACACATCGTAAATCGAaacataatattgttgaacCGAAAACGTGTGCATGTGAAGTTTGTGGGAAAGAATTCAGTAGTCGACAAGCTATCCACAGTCATATGAGATTACATtga
- Protein Sequence
- MVKKTCRLCLGTAPICFSLLTPDISKMLESLTSIKINEDDELSTVSCTKCLLNVKLAFNIQQNIIKIDTKLRNNHLNNKEIKREICEVMLEEKDEILQTPTQTTTTTESLAICDNLCKICGISVVDNMMNHIQEHFQSVQECNNCKQNFKNIHEYRQHLLNCQQQNVEKKDSYTCEKCGSKFRYESLYNLHMKNHENDDYVDSDDGGGGGGDDDKTNDDDGNDDDDDNNEVEDGETGEKLLNGQYFRVVINDKISYRCNVCLRVYKSRKQFVKHTHDRKRCPVCNANITVSNWKKHVSNHSSGPQICELCGATLRSLESLRGHMTHTHSKQRYKCEECNLTFKVHYNYLKHCKSHTGEKDHICDQCGRGFITKHYLNKHIKLKHLKLRPHICEFCKRGFSSKNALSTHRRQHTNETPYRCEVCGEGFRQNVSLRTHRKSKHNIVEPKTCACEVCGKEFSSRQAIHSHMRLH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01022480;
- 90% Identity
- -
- 80% Identity
- -