Ltri006000.1
Basic Information
- Insect
- Lydus trimaculatus
- Gene Symbol
- -
- Assembly
- GCA_037414755.1
- Location
- JAZBGY010000879.1:31711-33127[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.36 20 5.6 0.4 2 23 118 138 117 138 0.84 2 11 0.14 8 6.8 3.6 3 23 145 166 143 166 0.94 3 11 0.00081 0.046 13.9 2.4 1 23 176 198 176 198 0.98 4 11 0.013 0.74 10.1 5.4 1 20 238 257 238 259 0.95 5 11 0.063 3.5 7.9 0.2 2 23 262 282 261 282 0.95 6 11 0.01 0.58 10.4 0.5 3 23 289 310 287 310 0.94 7 11 7.8e-05 0.0044 17.1 5.4 1 23 315 337 315 337 0.98 8 11 2.8e-06 0.00016 21.7 0.9 1 23 343 366 343 366 0.96 9 11 0.00018 0.01 16.0 7.8 1 23 372 394 372 394 0.98 10 11 5.6e-05 0.0032 17.5 0.9 1 23 400 423 400 423 0.98 11 11 2.6e-05 0.0014 18.6 1.8 2 23 432 453 431 453 0.96
Sequence Information
- Coding Sequence
- ATGGATAAAAGACAATGTAGGTTATGTTTAGGTACACCAACAGTCTATTTTTCATTGTTAGAGAAACAAATATCCCAACAATTAGAATCTTTAACATCAATTAAGataaaagaAGACGATGATTTATCGACAATAACATGCACAAAATGTATGTTGAATGTGAAATTAGCgtttaatattcaacaaaatattataaaaactgATGGTAAATTGCGTagtaattatttcaatcatgtggtaataaaacaagaaataccTGAAGTCATTTTGACGGAGGATGAGATTTTACCGTCAAatacaacaacgacaacaccaccaccatcaggGGAATCGTTAAAAATCTGCGATTCCGTATGTAAAATTTGCGGTAAACATATTGATGATGGTTCAATAATGAAACATATTCAAGAACATTTCCAATCAACACAAAATTGtggtaattgtaatgaaaattttaagaatatccaagaatatcatcaacatattTTGAATTGTCATCAAGAACAGAAGGGTAAAGTTGACTCGTTTGTGTGTCAAACATGTGGTAGTAAATTTCGATACGAatcattatataatttacacaaaaaaacccacaataataataataagagtcGTAATGCAACTAAAAGTAATGAAGTGAAACGAGATCGTTTGGTTGGGAAATTTTTTGAAGTTACAGTCAAATTACCCACAAAAACCGATAAACCATTGTATACGTGTGATGTATGCCAAAAGAAATTCCATCATCGTAAACAATTCTCAGCACATACACATTTACGTAAAAAATGTCCAATATGTAATGCTGAAATTACTGTAACAAATCTAAAAAAACATATATCAAATCATACATCTGGACCACAAATATGTGAATTATGTGGTGCAACATTGAAAAGTTTAGAAAGTTTACGTGGTCATATGTCACATACGCATAGTACAAAAGTACATACATGTGAACAATGTGGTAAAACATTCCGTAAACGTTATACGTATTTGttacatttgaaaaaacaTTCCGGTGAAAAGGGACATATTTGTGAGACATGCGGTAAAGCATttataacattattttatttaaataaacatataaaaatggCACATTTAAAATTACGTCCACATAAATGTCAATATtgtcataaacaattttctagtAAATTTGCTTTACGTACACATGAACGACAACATACAAATGAAACACCATATAAATGTGAAGTATGCGGTGATGGTTTTAGACAGAATGTTTCATTACGATCACATCGTAAATCAAAACATAATATTATTGAACCGAAAACGTGTGCATGTAAGATTTGTGGTAAAGAATTTAGTAGTGAACATGCTGTAGTTACACATATGCGACTACATTAG
- Protein Sequence
- MDKRQCRLCLGTPTVYFSLLEKQISQQLESLTSIKIKEDDDLSTITCTKCMLNVKLAFNIQQNIIKTDGKLRSNYFNHVVIKQEIPEVILTEDEILPSNTTTTTPPPSGESLKICDSVCKICGKHIDDGSIMKHIQEHFQSTQNCGNCNENFKNIQEYHQHILNCHQEQKGKVDSFVCQTCGSKFRYESLYNLHKKTHNNNNKSRNATKSNEVKRDRLVGKFFEVTVKLPTKTDKPLYTCDVCQKKFHHRKQFSAHTHLRKKCPICNAEITVTNLKKHISNHTSGPQICELCGATLKSLESLRGHMSHTHSTKVHTCEQCGKTFRKRYTYLLHLKKHSGEKGHICETCGKAFITLFYLNKHIKMAHLKLRPHKCQYCHKQFSSKFALRTHERQHTNETPYKCEVCGDGFRQNVSLRSHRKSKHNIIEPKTCACKICGKEFSSEHAVVTHMRLH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00987387;
- 90% Identity
- -
- 80% Identity
- -