Ltri004283.1
Basic Information
- Insect
- Lydus trimaculatus
- Gene Symbol
- UGT5
- Assembly
- GCA_037414755.1
- Location
- JAZBGY010000537.1:43011-47208[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0028 0.16 12.2 0.6 4 21 447 464 447 465 0.93 2 12 0.012 0.66 10.2 1.6 1 23 473 495 473 495 0.98 3 12 0.00063 0.035 14.2 0.5 1 23 501 523 501 523 0.98 4 12 0.00027 0.015 15.4 4.9 1 23 529 551 529 551 0.94 5 12 0.002 0.11 12.7 2.8 1 23 557 579 557 579 0.99 6 12 0.0015 0.082 13.1 2.8 2 23 718 739 718 739 0.96 7 12 1e-05 0.00059 19.8 1.1 2 23 784 805 783 806 0.94 8 12 7.7e-05 0.0043 17.1 0.1 1 20 816 835 816 837 0.94 9 12 3.9e-05 0.0022 18.0 0.6 1 23 845 867 845 867 0.99 10 12 0.31 17 5.8 2.2 2 23 874 895 873 895 0.96 11 12 0.00028 0.016 15.4 0.9 1 23 901 923 901 923 0.96 12 12 0.47 26 5.2 2.5 3 23 931 951 929 951 0.94
Sequence Information
- Coding Sequence
- ATGCCATCACCATCGTACAGTCATCAAATCGCTTAtcgttctttttttattgaattaacaaGACGTGGTCATGATAtcacattatttacaacagatccaataaaacacaataatttaacaaatcttaaacaaattgatttgaGTGAATCTTATAAAATAGCCCGGCAAGAGAATTTAGTAGAAAAGATCAGTGCtggaaatattacaatttttcaaatgattatgAAATTGACGAAAATTATAGATGATGTTATCAAATATACGATATGTCatgatgaattaaaaacaatcgtTAAAAGTAATGATAAGTATGATTTAGTTATTTTTGAGTATCTATTATCAGGAACATTAGCAGCAGcttatcatttaaattgtcCTTATATTGGTGTTGTTTCAATGGATGCTACATGGTATGGACATTTAGCAATGGGTAATCCTATCCATCCAATTGCAAATCCCGATCAAAATCTACCATATATTAAAGATTTAACATTTAAAGAGCGATTATTTAGCACAATTTACTCGTCAGTGGTCTTTTTATTAGCGTCCGTCTTCTTGGTGAAGAAACAAGAttattatattggaaaatgttTAGGTAATACACCACCATTGTTAGAATTGGAAAAGAACGTTAGTATGGTGTTTATAAATTCGAATCCTTTATTCCATAATGTTAGGGCATTAGGTCCGGCTACGATAAATGTGGCCGGCAAACTACACATGACTGAATTTAAGCCGTTACCAAagGATTTAAAAAGACTTTTGGATGATTCTAAAGACGGTGTAATCTATTTTAGTCTAGGTTCAAATGTTAAAAGTAAAGATCTCGGTAATAGGAGCCGACACGTTATTCTAGAAACATTATCAGAACTACCCTATACAGTTCTATGGAAATATGAAGAAGATAATTTAGAAGGATTACCAAAGAATGTTCATATCAACAAATGGTATCCACAACAAGATGTACTGAGACATTCAAatgtgaaattgtttataacacaAGGTGGATTACAATCATTAGAAGAAGCCGTCTACAACTATGTCCCTTTAATTGGAATGCCGTTTTTCGGTGATCAGTtctacaatattaaaaaaatcgttGATCAAGGTTTTGGATTATCATTGGATCATGATAATTTAGAGAaagaacaatttaaacaaacaatacttGAAGTTATCAATAATCCGGAATATAAAcgtaaaattaaagaaatggCTGATTTATCATTAGATCAACCAATGAGTGGATTAGAAAAAGCTGTATGGTGGACGGAATATGTGATTAGAAATAAAGGTGCCAAATTACTTAGAAATCCAATAAAAGATCTACCTATTTATCATGATTGTGGACGACAATTTCGCAGTAGAAGTGAATTATCACAACATACCAAATCAAATTGTGGTACTATCAAACGATTCAAGTGTAAAatCTGCAGCCAAGAGCTAATGTCGGCCGGCTCTTTGCACAATCACACAATGCGGCATATTGGTGAACGGCGCTTCATGTGTCGATATTGTGCAAAATTATTCTATACAGCAGGTCAATTGAAAGTCCACGAACGTATCCATACACAAGATAAAGCTTATGTTTGTAATatttgtaataaaagtttttgtCATCGGCAAAGTTTAATAACACACAGTACATTACATACCGGTATTAAACCATTTCAATGTGAGAATTGTGGAAATTCGTTTAGTTGCattggtaatttattgaaacatcGTAAAACACATGCAGATACGTGTGGATTAGTTCCGTTAACAACACATCGTGTTGAACATCCAAATACCAAGATAAAAGTGAAAATTAATACGCCGGTGAATACACGATTGAAGACTATTGCAATGAATCGAGAATTAGACAAAGAAATCGATTTGAtcaaaaaagaattaaatgatgattcaAATGATAAGGAAATCactaaaattgaaacattagaGAATGAGAAACACgaagtttttataaaagttgaacAAAACGATATGAAAACAGTGAAAGAAGAATTGTgcaataaagagaaaaaatttACCGATAGAAAgatcaataaaaaaagatcTAAAAGAATCGGAAAGCAGCAAGACCGTGAACTGGAAATTGCTTTTAAAAGATTCATTACAGAATGGAAACTTGaaaatgtaaaaaatccATCTTGTAAATTCTGTAAGAAAACTTACACAAATACCAAATGGTTATTCCGGCACGTACAGGAGCACGGTATTGATTGTCAAACAACAAATCCGGGAACTCTTCAATTGTTACCACATAAGTGTAGTTGTTGTAAACAATCGTTTGCATCCAAAGAAGAATGTTTGGATCATCAACAGAAAACACATTCTAATATTttgaCTTGTTACGACTGTAACAGAATTTTCGCCAATCGAGATTCACTCCAAACCCACATTAATATCCATCATAAAGGTGTTGAACGTAAAATCTATTCGTACATTTGTGAGAAATGCGGTGTAATTTTCCGACAAAAAGCCCAACTTAACAAACACGAAGAAATGAACTGTAAACGAGGACCATCATATGAATGTGCAGTGTGTGAGAAAAAATTCACTAGTGCAAATACACGTAATAATCATATGCGGATACATGACCCAGAAAAACGATTATCATGTAGATTCTGTATGAAACGGTTTCGTTGGAAAGGACAATTGAAAATCCATGAACGTAAACATACTGGTGAGAAACCGTTTATTTGCGAATTATGTTCGAAAGCGTTTGCACACCGTGAAAGTTTAATCACACATAAAACAATACATACAGGCATCAAACCACATTTGTGTGAAGGTTGTGGATCTCGGTTTTCTTGTATTggtaatttgataaaacatcGTGTTAAACATGCAAATAAATGTGGTGACtggaaatataaaacaaaagaattaatgacgaaaacaaatctattgtaa
- Protein Sequence
- MPSPSYSHQIAYRSFFIELTRRGHDITLFTTDPIKHNNLTNLKQIDLSESYKIARQENLVEKISAGNITIFQMIMKLTKIIDDVIKYTICHDELKTIVKSNDKYDLVIFEYLLSGTLAAAYHLNCPYIGVVSMDATWYGHLAMGNPIHPIANPDQNLPYIKDLTFKERLFSTIYSSVVFLLASVFLVKKQDYYIGKCLGNTPPLLELEKNVSMVFINSNPLFHNVRALGPATINVAGKLHMTEFKPLPKDLKRLLDDSKDGVIYFSLGSNVKSKDLGNRSRHVILETLSELPYTVLWKYEEDNLEGLPKNVHINKWYPQQDVLRHSNVKLFITQGGLQSLEEAVYNYVPLIGMPFFGDQFYNIKKIVDQGFGLSLDHDNLEKEQFKQTILEVINNPEYKRKIKEMADLSLDQPMSGLEKAVWWTEYVIRNKGAKLLRNPIKDLPIYHDCGRQFRSRSELSQHTKSNCGTIKRFKCKICSQELMSAGSLHNHTMRHIGERRFMCRYCAKLFYTAGQLKVHERIHTQDKAYVCNICNKSFCHRQSLITHSTLHTGIKPFQCENCGNSFSCIGNLLKHRKTHADTCGLVPLTTHRVEHPNTKIKVKINTPVNTRLKTIAMNRELDKEIDLIKKELNDDSNDKEITKIETLENEKHEVFIKVEQNDMKTVKEELCNKEKKFTDRKINKKRSKRIGKQQDRELEIAFKRFITEWKLENVKNPSCKFCKKTYTNTKWLFRHVQEHGIDCQTTNPGTLQLLPHKCSCCKQSFASKEECLDHQQKTHSNILTCYDCNRIFANRDSLQTHINIHHKGVERKIYSYICEKCGVIFRQKAQLNKHEEMNCKRGPSYECAVCEKKFTSANTRNNHMRIHDPEKRLSCRFCMKRFRWKGQLKIHERKHTGEKPFICELCSKAFAHRESLITHKTIHTGIKPHLCEGCGSRFSCIGNLIKHRVKHANKCGDWKYKTKELMTKTNLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -