Ltri004094.1
Basic Information
- Insect
- Lydus trimaculatus
- Gene Symbol
- RREB1
- Assembly
- GCA_037414755.1
- Location
- JAZBGY010000506.1:14895-19974[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.3e-05 0.0013 18.8 0.4 1 23 98 120 98 120 0.99 2 15 0.00038 0.021 14.9 0.4 1 23 137 159 137 159 0.98 3 15 5.4e-05 0.0031 17.6 6.4 1 23 165 187 165 187 0.98 4 15 3.6 2e+02 2.4 0.2 1 9 269 277 269 293 0.73 5 15 0.073 4.1 7.7 3.1 2 23 299 321 298 321 0.96 6 15 2.5 1.4e+02 2.9 0.9 1 19 367 385 367 387 0.81 7 15 0.065 3.7 7.9 0.1 1 23 533 555 533 555 0.96 8 15 7.4e-06 0.00041 20.3 0.8 1 23 564 586 564 586 0.99 9 15 0.0013 0.072 13.3 2.3 1 23 592 615 592 615 0.97 10 15 0.00045 0.025 14.7 3.0 1 23 1014 1037 1014 1037 0.97 11 15 0.0005 0.028 14.5 0.5 2 23 1258 1279 1257 1279 0.97 12 15 0.11 6.4 7.1 6.3 1 23 1285 1308 1285 1308 0.97 13 15 0.023 1.3 9.3 1.1 1 23 1368 1391 1368 1391 0.96 14 15 0.015 0.85 9.9 0.4 3 23 1449 1469 1447 1469 0.93 15 15 0.0068 0.38 11.0 5.9 1 23 1475 1497 1475 1497 0.98
Sequence Information
- Coding Sequence
- ATGGAGACATCATCTGAACCAAATGATTTAAccaaagaaaataataataataataagcaacaattaaataaccaaagtaataataacaataataatcagaaCGACTCAGGcatttattcaacaacaaattcaacaattaacagTGAATCACCAATGGATGCATCAATAAATATGACGATAAACTCagataattgtgataattacGATAATCGTAGTGATTGTAgtacaacaccaccaccatcaacaatacaagatgaagaacaacaacaacaagatgaacAACAGAAACACTACGTATGTCCgatttgtgataaaatattgatatcaCAACACGAATTTACATTACATATACGTTcacataataatgaaacaataacagaattaaataatgataataatgataaatcattTACATGTCGTATATGTTATAAAGTATTAAGTTCCAGTTCTAGTTTAGATCGACATGTTTTAGTCCATAGTGGTGAAAGACCAtttcattgtaaatattgtggtGATACATTCACAACAAATGGTAATATGCACCGACATATGCGTACacattcaaataataacaataatatcaataataataataatagtaaatttgataattatgaaTCTGATGGTAGTATTGATAGCAATATTAGTGcaaattctaaaaatacagaatataataataataataatagaattgagTCAAGAAAACGTAAATTAGAGGAtgtggatgatgatgatgatgatgatgatgatattgatgatgattatgatgaaaatcaacaacatatagatgatgaacaacaaaattataaatgtccAGTATGTGAACGTACcgattttaattcattaaaaatattagaaaatcatttaGAAGATAATCATCCTGATTATCCTGTTAAATGTAATCAATgcaatcaattatttcaaaatcataaattattaacaatccATCGTACAACATTACAtggaaataatcaaattaaacatcATGTTATGGGTTTTAAAGATTTaacatttgttgatttttctagTGAGAAATTTCCACATATTGCACGTTATGAATGTGAAAAGAATTTACATAAAGTTAATAGTGGTTTACGTTTTCAATGTCGTAAATGTTCAAGAGCATTCCCATGTTCAAATTCATTAGATATACATGCAAAcgattgtattttaaatgataataataatggtttagatttaacaaaaacaacacaattatcaGAGAATGATATCAAAAGGAATGAATTCTTTTCAAGATTAAATTTACAAGATAATTCACCGGAgaaatcaccaccaccaccacaatcatCATATCAAACACAACAATTGAATGAAACATCAACGAAATTACGTCAACAATTATTAGCGAAAGCCATCAATATGGAAACAACTAAAGATCTAGCTGATATACAATCGATAATATCAATGACGACAAATGGtagtttattacaacaattacaaacgaaaaatgatattgttgttaatcataaacaacaagaacaaaatgattttatcaataatcgtCAAGatcaacaagaagaagaaacgCAAGATTTATTTGCTGTGGAATTTCGTAAAATGAAATTACGTGGTGAATTTCCATGTCGTTTATGTACAGCTGTATTTCCAAATTTGCGTGCATTAAAAGGCCATAATCGTGCCCatttaaatagtaataataatggtatgTATCGTTGTAATATGTGTCCACATTCATCAATTGATAAAGCAGCATTAATACGTCATATGCGTACGCATAATGGTGATCGTCCATATGAATGTGCATTATGTAATTATGCATTTACAACAAAAGCAAATTGTGAACGACATTTAAGGAATCGTCATGCAAAATCAACACGTGAAGAAgttaaaaaatcaatcatcTATCATCCATCTGAGGATCCaacaaatgaagatttaaataaattagcaCGTGAtgagaaaaaattgaatttatcatcAAGTGGTGATAGTAGTGATTTATCACCAGAAAAACATtgtattaaaacgaaaaataatgATGTATTTATAccgaatttattaaaagaaactcTACAAAAAGATACAATACCATCGAAAGTATTCCATCATAATATCACCGATATTATACGTAATGAGAatttgaaatcattaaaagATCATAGTCTTGATAACGAACAATTATCACCATATCTCTTAAAACCGTATAATTTCTCACcgaaaaatacaaatctatCAACACCACATCTACCACCATCCAAAATACAAGTGAAAAGTTTGGAAgcattaaaagaattaaattataatgaaacacaATCAGattctgataataatgaattagaaGATGAACCGATGGTATTAGATTTGAGTAAAAAGAGAATTGATGatcgtgatgatgatgatgatgatgagagaATAGTTCCAGAAGATTTATCAAGGAaatcatcaccaccattagcaccaccaccactaccaccaccaccaccattattattacaaccaccaccaacaacaacaacaccaccacaattgaatatgaatgaaatttttgctCAACATTTATTATCGAAAACACCACCGAAAATTGATCCAGCAGCATTATATGCAACACAATTAGCATTAGCTAGAAATAGTTTTCATGGTTTTGCAAATTGGCCTGGTTTCCCAATCAATCATCTATTATTTCAATCATTACAAACACCAATTCTACCACAAGATACACAAGATATTAAAGAACGTTTACAACGTTATCAATtatgtggtggtggtaatttgattaatgataatttcacTGAACGTttaaagaatttacaaaattttccaaattataatttagcaGAAACTAACGATAATTTGAGCCCTAGGAAGATGGATGATTTGAAACCATTAAATATCGATACGAATTATAATGAGAATTCTAATATTAATCTACAAAGTCCGGTAGCTagcaaacaacaacaacaagagttAGTACAATCACCAAATTCTGTTAAAATGGTGATAAAAAATGGTGTTTTAATGCCAAAACAGAAACAACGTCGTTATCGAACTGAACGTCCATTTACATGTGAACATTGTTCAGCTAGATTTACATTACGTTCAAATATGGAACGtcatataaaacaacaacatccacAATTTTGGTCGCAACGACAACGTGGTCTTGGTACACCTGGAcgtaaaattcaaacaacaacaacacctgttaaaaattattgcgATATTAATATACCGAATTATGAATCACAAAAGAATTCTGATattgatgaaacaacaacaacaacaacaacaacaataaaaaccgaacaaattgatgaaaaattaaaatttgctttattatcacaacatttacataataataataataataataatacaaataatgagattaaaaaagaagaagatgttgatgattgtgcattaattattgatgaaaatattgaGAAAAATCAAGAGGATAAAAGTCGAATTTTAGAAGAGAAACTTAAAGAACTACATGCCAAAcatgataacaacaatcataaattgataaaacaagaagaaaatcaAGATTTAGTACCAGTTTCACGATTACTAGATAATGcttcacaacaacaattcaaagaatattttaaaagagaTAATGAAGAACATGAGACTGGTGGTGGTagtgaagaagatgaagaaggcTTAATTGCCAGTGGTAGTACTAGTGAAGGCAATATTTCTGGTACTGATGAAAATAGATCTGAATCCGAGGCTCGGCCACCGGTTAAAAAGAAATCAGCTTATTCTATGGCACCGAATCGTGTCAGTTGTCCATTTTGCAGTCGTAAATTCCCTTGGAGTTCATCGCTACGTCGTCATATATTAACCCATACTGGTCAAAAACCGTTCAAATGCAGCCATTGTCCATTATTATTCACAACGAAATCAAATTGTGATCGTCATTTATTGAGGAAGCATGGTGATGATATACGGGCGCAAGGTTATGAAGCTGGTAGTTCTGAAGATGAGAAGATTTCAACTGATTCTAccccacaacaacaacaacaacaacagaaaacaataaatgaatgcaatgataatcaaataaatcataatacaaaagaacaacaaatcgTTCAAAATACAGATCTACCATTCAAATGTCATCTATGTGAAGGTTCATTTAGTGATCGTCAAGATGCTTTAGATCATATAAAAGAGAAGCATTTTTCTGAATATGATCTATTAATGTCGAAAAATGCATTAGATAATAATGCAATGTTagcaataaatacaacaacaacaacaacaacaacaaatacaaacgaTGATCATCATGAAGATGAAGAGAATGATATACGTGGTAAATTTCCAGATTATTCAAATCGTAAGGTGATTTGTGCATTTTGTATGCGTCGTTTTTGGTCAGCAGAAGATCTACGTAGACATATGCGTACACATACAGGTGAACGACCATTCAGTTGTGATATATGTCGCAGACGATTTACATTAAAACATAGTATGTTGCGTCATCGTAAGAAGCATAATGTTAATTTCGATCatgataatggtaataatagtgatgatgataataatctaattaatttagaaaaatatagtAAACTTTTCAcaactaccactactactggTGTTATTCTAggcggtggtggtgataatgtGAAACATGGGGATAGAACTGAAGAATCTGATGGTAATGAAGGTGGTGATTTGATTAGTAATCTATTAGGTATAAGAGATCgttcatttattgataaagtCTTAACAGCATCACCTGATGATGTTGCTAAACTATTGGGAGTCAAAAACGGTATTAAAGAATAA
- Protein Sequence
- METSSEPNDLTKENNNNNKQQLNNQSNNNNNNQNDSGIYSTTNSTINSESPMDASINMTINSDNCDNYDNRSDCSTTPPPSTIQDEEQQQQDEQQKHYVCPICDKILISQHEFTLHIRSHNNETITELNNDNNDKSFTCRICYKVLSSSSSLDRHVLVHSGERPFHCKYCGDTFTTNGNMHRHMRTHSNNNNNINNNNNSKFDNYESDGSIDSNISANSKNTEYNNNNNRIESRKRKLEDVDDDDDDDDDIDDDYDENQQHIDDEQQNYKCPVCERTDFNSLKILENHLEDNHPDYPVKCNQCNQLFQNHKLLTIHRTTLHGNNQIKHHVMGFKDLTFVDFSSEKFPHIARYECEKNLHKVNSGLRFQCRKCSRAFPCSNSLDIHANDCILNDNNNGLDLTKTTQLSENDIKRNEFFSRLNLQDNSPEKSPPPPQSSYQTQQLNETSTKLRQQLLAKAINMETTKDLADIQSIISMTTNGSLLQQLQTKNDIVVNHKQQEQNDFINNRQDQQEEETQDLFAVEFRKMKLRGEFPCRLCTAVFPNLRALKGHNRAHLNSNNNGMYRCNMCPHSSIDKAALIRHMRTHNGDRPYECALCNYAFTTKANCERHLRNRHAKSTREEVKKSIIYHPSEDPTNEDLNKLARDEKKLNLSSSGDSSDLSPEKHCIKTKNNDVFIPNLLKETLQKDTIPSKVFHHNITDIIRNENLKSLKDHSLDNEQLSPYLLKPYNFSPKNTNLSTPHLPPSKIQVKSLEALKELNYNETQSDSDNNELEDEPMVLDLSKKRIDDRDDDDDDERIVPEDLSRKSSPPLAPPPLPPPPPLLLQPPPTTTTPPQLNMNEIFAQHLLSKTPPKIDPAALYATQLALARNSFHGFANWPGFPINHLLFQSLQTPILPQDTQDIKERLQRYQLCGGGNLINDNFTERLKNLQNFPNYNLAETNDNLSPRKMDDLKPLNIDTNYNENSNINLQSPVASKQQQQELVQSPNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQFWSQRQRGLGTPGRKIQTTTTPVKNYCDINIPNYESQKNSDIDETTTTTTTTIKTEQIDEKLKFALLSQHLHNNNNNNNTNNEIKKEEDVDDCALIIDENIEKNQEDKSRILEEKLKELHAKHDNNNHKLIKQEENQDLVPVSRLLDNASQQQFKEYFKRDNEEHETGGGSEEDEEGLIASGSTSEGNISGTDENRSESEARPPVKKKSAYSMAPNRVSCPFCSRKFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGDDIRAQGYEAGSSEDEKISTDSTPQQQQQQQKTINECNDNQINHNTKEQQIVQNTDLPFKCHLCEGSFSDRQDALDHIKEKHFSEYDLLMSKNALDNNAMLAINTTTTTTTTNTNDDHHEDEENDIRGKFPDYSNRKVICAFCMRRFWSAEDLRRHMRTHTGERPFSCDICRRRFTLKHSMLRHRKKHNVNFDHDNGNNSDDDNNLINLEKYSKLFTTTTTTGVILGGGGDNVKHGDRTEESDGNEGGDLISNLLGIRDRSFIDKVLTASPDDVAKLLGVKNGIKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -