Ltri006185.1
Basic Information
- Insect
- Lydus trimaculatus
- Gene Symbol
- lola
- Assembly
- GCA_037414755.1
- Location
- JAZBGY010000920.1:6979-23373[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.6 90 3.5 1.0 9 23 1 16 1 16 0.89 2 20 0.00048 0.027 14.6 1.0 3 21 30 48 28 49 0.96 3 20 0.028 1.6 9.0 2.1 1 21 100 120 100 121 0.96 4 20 0.11 6.1 7.2 2.1 1 23 129 154 129 154 0.92 5 20 7.5e-05 0.0042 17.1 2.1 1 21 171 191 171 192 0.95 6 20 8.8e-05 0.0049 16.9 1.3 1 21 228 248 228 249 0.96 7 20 2.1 1.2e+02 3.2 0.7 1 18 257 276 257 276 0.94 8 20 0.022 1.2 9.4 1.9 1 21 278 298 278 299 0.94 9 20 0.0024 0.13 12.4 1.5 1 22 307 328 307 328 0.95 10 20 0.016 0.9 9.8 1.7 3 21 332 350 330 351 0.94 11 20 6.3e-06 0.00036 20.5 3.0 1 21 373 393 373 394 0.96 12 20 0.053 3 8.2 1.4 1 23 402 425 402 425 0.94 13 20 0.0096 0.54 10.5 1.2 1 21 477 497 477 498 0.92 14 20 0.0015 0.082 13.1 0.2 1 22 507 528 507 528 0.96 15 20 0.00023 0.013 15.6 1.0 2 23 531 553 530 553 0.91 16 20 0.0046 0.26 11.5 1.0 1 21 570 590 570 591 0.95 17 20 0.0004 0.022 14.9 1.5 1 21 627 647 627 648 0.96 18 20 0.0029 0.16 12.2 3.6 1 23 656 679 656 679 0.96 19 20 0.00019 0.01 15.9 0.9 1 21 752 772 752 773 0.95 20 20 0.0087 0.49 10.7 6.6 1 23 781 804 781 804 0.97
Sequence Information
- Coding Sequence
- ATGTTTAAACGTAAAGATCACGTTCAACGACATTATCTCGAATTGCATATATTCAATCAAGAAAATATGGGCTATCCATtTTATTGGTGTGATAGATGTGGAAAACAGTACAAACATTTAGTTTCTTTAACAAGACATCAAAGATATGAATGTGGCAAAGCGGCGAAATTCAAATGTTCATTCAGTGGTTGTAATTTTCGAACGAAACattatcgttattatcctactacaacaacaacaacaacatcatcatcaacaacaacaacaacaccaacaataacatcTGAACACAAACATTTCCGTTGTGGTGGCTGTAATCGTtggtataaatatttacataatttacgTTCACATCAGAAATATGAATGTGGCAAAGAACCGAAATTTATTTGCACCTATGAAGGATGCACATTTAAATCGAAGAAAAAAGGCAATTTGAAACAGCACATCTTCAACAAACACGGTTTTCGAAGATATAGAACACGTGATAATTCTGGTAAAATGAATCAATTCTTCTGTCCAAATTGTGGTCGTTCATACAAATATCAAAGGAATCTACATGCACATTTGAAATTCGAATGTGGCAAAGAACCAAAATTCATCTGTTATTTTGATGGTTGTTCATATCGTGCAAAAATTAAACGTAGTCTTGATTCACATATAGCCAACAGACATCaCCGCTATATGTGTTCAAATTGTGGgaaaacatacaaatataaaagagGTTTATCACAACATTTACGTTATGAATGTGGTAAGGAGCGGAATTTTGTATGTAAAGAACCAAATTGTGAATATCGTTCATATAGAAAAGAACATTTAAAAAGAATCTTCATCTGTAATAATTGTGGCAAATCTTATCTACATCGTGAATCTTTATATAATCACAccaagttttattgtttaaaatcagCAGCTTTTCATTGTGATTATTGTACATATCAAGCTAAAACTAAATGGAATTTAAAAGTACACATGAATCgtCGTTTTGGTTGTCGATTATGCGGTAAATTCTATCAACGTAAAGGTGCACTACAACACCACAAGAAATTCTATTGTCAAAAAGAGCCGGcgttttcttattgtctacaaaatattgaaacagaCATAGGTTCATATGTTTGTAAAGAATGTGGTCGCTGTTATAAACGTAAAAGTTCCTTATATAATCATCGACGTTGGGAATGTGGTAAAGAGCCACAATTTAGATGTGCCTATTGTCCATATAAAGGCAaacaaaaaatccattttatCATGCATGTGATGGCAAAACATAAAGAACATAACAATACATCATTACCGACAACAGCGTCCACGAAAAAAGTCCGTAGTAAACATGGTGAAAATGGTCATTCATCGATGaggaaattcaaattattatcaacaacagatCAAACAGTACGACCTGGTTATAGTAGTGAATCACTATTTGCATGTCGACATTGTGGTAAACGATATCGTTGGAAATCAACGATGCGCCGTCATGAACAAGTTGAATGCGGTGGTAAAGAACCGATGTTTCAATGTACACAATGTCCATATAGGGCTAAACAAAAGGGCAATTTAGGCGTACACATACgtaaaattcttcaatgTTCATTCTGTTCAACACGATTTAAACGTGCCTCCGATATGAGACGGCATATAGTTGAACAACATGATGATAGTCCAAGGAAATTTGTTTGTGAAATTTGTCATATACGTTGTTATCCTTGTCCACAATGTCCACGAGTTTATAGTCATTATACGTCAAGAAGTAGACATTTAAAATATGAGTGTGGTAAAATGCCAacatttcaatgttttattaatcaCTGTACGTATGTAGCGAAGAGGAAAGATTACTACTATAACACAATACAACGACCACCGAAAAACTATCCTTGTTTAGTGTGTGGTAAATCATACAAATTCCGTCAATCACTCTATAAACATAGACGTTTTGAATGTGGTAAACCACCATCATTCAAATGTGATCATTGCCAATATCGTGGACGACGTAAAGCACATCTAGATGCACATATCTTAAATCGACATTCTAgcaaattaaaattatcaccaTCGCAAGTAGCTAAATATTATTCATGGTTAAATCTAGCATCAGTAACACcatcaatatcaatattacCAGAAAGAGTAAatacatcatcaacatcaacaacaacaacatcaataaaagataaattaaataatgaaacattaatGTCATCGATTTTGGATGTATccaatcattttttaaataattcaacacaaTTCTCTTGTATGAATTGTGGACGTTCATATAAATTACGTAGTTCATTACGTAATCATCAAAAATGGGAATGTGGTAAAGAGCCACAATTCAAATGTCCACATTGTCCATATCGTGCCAAACAAAAAATGCATGTTCGACGACATATACATCGTATGCATAATGATAATGTGAttttaacaacacaacaaaccgaacaaattaaaacagagAAGTGTAACATTGATAATGCTACTACTGATGCTGTCAATGATGATCAAGTTTCCTAA
- Protein Sequence
- MFKRKDHVQRHYLELHIFNQENMGYPFYWCDRCGKQYKHLVSLTRHQRYECGKAAKFKCSFSGCNFRTKHYRYYPTTTTTTTSSSTTTTTPTITSEHKHFRCGGCNRWYKYLHNLRSHQKYECGKEPKFICTYEGCTFKSKKKGNLKQHIFNKHGFRRYRTRDNSGKMNQFFCPNCGRSYKYQRNLHAHLKFECGKEPKFICYFDGCSYRAKIKRSLDSHIANRHHRYMCSNCGKTYKYKRGLSQHLRYECGKERNFVCKEPNCEYRSYRKEHLKRIFICNNCGKSYLHRESLYNHTKFYCLKSAAFHCDYCTYQAKTKWNLKVHMNRRFGCRLCGKFYQRKGALQHHKKFYCQKEPAFSYCLQNIETDIGSYVCKECGRCYKRKSSLYNHRRWECGKEPQFRCAYCPYKGKQKIHFIMHVMAKHKEHNNTSLPTTASTKKVRSKHGENGHSSMRKFKLLSTTDQTVRPGYSSESLFACRHCGKRYRWKSTMRRHEQVECGGKEPMFQCTQCPYRAKQKGNLGVHIRKILQCSFCSTRFKRASDMRRHIVEQHDDSPRKFVCEICHIRCYPCPQCPRVYSHYTSRSRHLKYECGKMPTFQCFINHCTYVAKRKDYYYNTIQRPPKNYPCLVCGKSYKFRQSLYKHRRFECGKPPSFKCDHCQYRGRRKAHLDAHILNRHSSKLKLSPSQVAKYYSWLNLASVTPSISILPERVNTSSTSTTTTSIKDKLNNETLMSSILDVSNHFLNNSTQFSCMNCGRSYKLRSSLRNHQKWECGKEPQFKCPHCPYRAKQKMHVRRHIHRMHNDNVILTTQQTEQIKTEKCNIDNATTDAVNDDQVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -