Ltri006924.1
Basic Information
- Insect
- Lydus trimaculatus
- Gene Symbol
- -
- Assembly
- GCA_037414755.1
- Location
- JAZBGY010001081.1:8066-9727[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00031 0.018 15.2 2.0 1 23 35 57 35 57 0.96 2 10 0.015 0.86 9.9 0.9 5 22 123 140 120 142 0.85 3 10 5.4e-05 0.0031 17.6 2.3 1 23 160 183 160 183 0.95 4 10 1.2e-05 0.00066 19.7 2.2 1 23 224 246 224 246 0.98 5 10 4.8e-05 0.0027 17.7 6.2 1 23 252 274 252 275 0.95 6 10 0.002 0.11 12.7 2.6 1 23 281 303 281 303 0.98 7 10 3.2e-06 0.00018 21.5 2.2 1 23 309 331 309 331 0.94 8 10 3e-05 0.0017 18.4 2.3 1 19 337 355 337 359 0.96 9 10 6.9e-05 0.0039 17.3 2.0 1 23 365 387 365 387 0.99 10 10 2.7e-05 0.0015 18.6 0.3 3 23 398 418 396 418 0.97
Sequence Information
- Coding Sequence
- ATGCCAGGGGATCGACATTccgggccccgATTAGTAACAATTTTGGATGAAAGTTcgattgatgataatttattaacattaaaacagAATGCACCAATCACatataaatgtgaatattgtgaaacaatatttgataatcaaACCAAACTAGATAAGCATATAGTTCATCATAAATCGATACGTAAAATCAAATCTAAACCATTAATAACTAAATTACCAAAACCATTAGACATTAATTTACAatcgaataaaaataataataatactgatgattttaataatgatgatgatgatgatgatgatgataaggtAGAATCAAATGaggaatttgataaatttgccaatctaacaacaaaaatgtgtATAAAATGCAATATAATATTTCGTAcgaaaacattattaaaaaaacatgtttACGATAAacataatattaaattgaaacgtTCTAGACGTAAAAAATCAGAAATTATACCGAAATTCTTTTGTGATTTATGCGAGAAAGGTTTTACACGAAAATCAGATATGgagaaacataaaaaattgaaacatttcgaaaatgatcaaaattcaataacaacaaataccaccttaacaacaacaacaaaatcgaaaaattacgaaattataAAACGTTGCAAAATCACTGATATCGAAGATGGtcgaatttattataaatgtgatCAATGTTCACgtattttcaaacaatcttATAATATGATACGTCATCGTACAATCCATACAGGTGTACGTTCGTATTGTTGTCATTTATGTGGTAAAAGTTTTCGTATGTCGAATGGTTTAAGTCGACATATAAACGAACATCATTTAggtattaaaaaatataaatgtgatATTTGTATGAAACGATTTTGTTCACGTGCTACATTCGATGaacatttaaatatacatacCGGTGATCGTCCATATGTTTGTGATATATGTGGTAAAACATTTCGACAAAAAGGTTCATTACATATACATAAAACCTTCCATACGGATAATTATCGTTTTAAATGTGATATATGTGAGAAGAAATTCCGTCGTAATCAAGAATTAAAACATCACAGTTGGATACATAGTGGACATAAACCGTATAAATGTGATAAATGTAATACGGGATTTCGTTGGAGGAATGATTTGAAACGACACCAAAAAGTACATGAGAAATCAacgattgttgttgatgtgaTTTGTCGTATATGTGGATCGAATTTTAGTCAAGAACGTTATTTGAAGGCACACATGAAGATCCATCCGAATATTGATGGATTTAAAGAGCAGGAAATCGGTATACCAAAgattatctaa
- Protein Sequence
- MPGDRHSGPRLVTILDESSIDDNLLTLKQNAPITYKCEYCETIFDNQTKLDKHIVHHKSIRKIKSKPLITKLPKPLDINLQSNKNNNNTDDFNNDDDDDDDDKVESNEEFDKFANLTTKMCIKCNIIFRTKTLLKKHVYDKHNIKLKRSRRKKSEIIPKFFCDLCEKGFTRKSDMEKHKKLKHFENDQNSITTNTTLTTTTKSKNYEIIKRCKITDIEDGRIYYKCDQCSRIFKQSYNMIRHRTIHTGVRSYCCHLCGKSFRMSNGLSRHINEHHLGIKKYKCDICMKRFCSRATFDEHLNIHTGDRPYVCDICGKTFRQKGSLHIHKTFHTDNYRFKCDICEKKFRRNQELKHHSWIHSGHKPYKCDKCNTGFRWRNDLKRHQKVHEKSTIVVDVICRICGSNFSQERYLKAHMKIHPNIDGFKEQEIGIPKII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -