Ltri006160.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lydus trimaculatus
Gene Symbol
-
Assembly
GCA_037414755.1
Location
JAZBGY010000913.1:26114-27888[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 2.5e-07 1.4e-05 24.9 0.6 2 23 115 136 114 136 0.98
2 8 8.5e-07 4.8e-05 23.3 0.9 1 23 144 166 144 166 0.99
3 8 8.3e-07 4.7e-05 23.3 1.6 1 23 172 194 172 194 0.98
4 8 3.7e-06 0.00021 21.3 3.6 1 23 200 222 200 222 0.99
5 8 2.7e-07 1.5e-05 24.9 1.8 1 23 228 250 228 250 0.98
6 8 0.00081 0.046 13.9 2.7 1 23 256 278 256 278 0.99
7 8 7.5e-05 0.0042 17.1 0.7 1 23 284 306 284 306 0.95
8 8 4.4e-05 0.0025 17.9 1.3 1 23 312 334 312 334 0.99

Sequence Information

Coding Sequence
ATGGCACagaaattcgataaaattgtGGTAGAGAAAgcgataataaaaaatttgctAAAACGTTGTAAAAatgaAGATTCGTGGCAGATGCCGGAGATGGTTGGTTATTACAACGGCTCCACTTTACCATTAACCGCCGTCGGAACAAACGACGACGTTCACAATTCATCACCATcctcatcttcatcatcaacaacaacaacaaacttgtCAACAATCAAGAAAGTTGTGTGCAGTCCAGATTTACCAATAGCTGCATatccatcaccaccaccaccaccaccgccacccaCATCATCACAACAGAATTCACCACTATTGGTGGATCAAATCGTTAATATCCAGTGtccaatttgtaataaaatgtaTACATCAAAGACGGCATTTCAAGCCCATCAACGTACACATACAAAAGAAACCGATGATCCATATCGTTGTAATATCTGTTCGAAAACATTTGCTGTACCAGCACGTTTAACACGACATTATCGTACACATACTGGTGAGAAACCGTTCCGTtgtgaattttgtaataagaGTTTCAGCGTTAAAGAGAATCTAAGCGTCCATCGACGTATCCATACAAAAGAACGTCCATATAAATGTGAGGTGTGTTCGAGGGCATTCGAACATTCCGGTAAATTACATCGACATATGAGGATACATACTGGTGAACGACCACATAAATGTACAGTTTGTTCAAAAACATTTATACAATCTGGACAATTGGTAATACATATGAGAACGCATACAGGTGAAAAACCGTATGTTTGTGGTGTATGTCAAAAAGGTTTTACATGTAGTAAACAATTGAAAGTACATAGTCGTACACATACTGGTGAGAAACCATATAGTTGTGAAATTTGTGGTAAATCATTTGGTTATAATCATGTATTGAAATTACATCAAGTTGCACATTATGGtgaaaaagtttataaatgtACAATATGTAATGATACATTCAATTCGAAAAAAAGTATGGAAGCACATATTAAAAGTCATTCAGAGAATGCACCTACTGTACCAACACCTCCAGCTtccacatcatcatcatctacaaaTGATTCctgttcatcatcatcatcatcatcatcaagtagtagtagtagtagtggtagtagtagcgACAAAGAGAATAAAGAATCATTGATTCTACCACAAGAATCAGCAACAATCAGTTATGATTCTGATATACGTTACTATATCTATCCACGTGATCGATTATCACCTACATATTTCCCACAAGCATACTCAGgaaatcataacaataataataataataatcataatgcATCAAATGGTATTGATTTGTTAACAACAGCAGCAAATGTGGCAGCTGAACGTGATGAAAAATTCCGTACatcaaatgttgttttaaatataataacaaaaacaccaCATCCATCATATTTTACATCACCAACAATACAGTATACACCGTTAAATGCTGGTGATGATATCCGTAGACGTGTAGAGGCTGCTTTAGCTGTTGATGAaatacaatcatcatcatcagaagAAGAGAATCTATTAACACCACCTAGTTCGAATCCTGTATCACCGGAACCATCATCAAGTCCTGATCCCGAATTGAGTTTACCACCAAGGAAACGGTCAAAAATGATATTGAAAAGTATGGAATCTGCACTTGATTTATTACCAGTACGGCATAGTTCCGTTATACAATATGCTCGCgcttcataa
Protein Sequence
MAQKFDKIVVEKAIIKNLLKRCKNEDSWQMPEMVGYYNGSTLPLTAVGTNDDVHNSSPSSSSSSTTTTNLSTIKKVVCSPDLPIAAYPSPPPPPPPPTSSQQNSPLLVDQIVNIQCPICNKMYTSKTAFQAHQRTHTKETDDPYRCNICSKTFAVPARLTRHYRTHTGEKPFRCEFCNKSFSVKENLSVHRRIHTKERPYKCEVCSRAFEHSGKLHRHMRIHTGERPHKCTVCSKTFIQSGQLVIHMRTHTGEKPYVCGVCQKGFTCSKQLKVHSRTHTGEKPYSCEICGKSFGYNHVLKLHQVAHYGEKVYKCTICNDTFNSKKSMEAHIKSHSENAPTVPTPPASTSSSSTNDSCSSSSSSSSSSSSSSGSSSDKENKESLILPQESATISYDSDIRYYIYPRDRLSPTYFPQAYSGNHNNNNNNNHNASNGIDLLTTAANVAAERDEKFRTSNVVLNIITKTPHPSYFTSPTIQYTPLNAGDDIRRRVEAALAVDEIQSSSSEEENLLTPPSSNPVSPEPSSSPDPELSLPPRKRSKMILKSMESALDLLPVRHSSVIQYARAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01366553;
90% Identity
iTF_00987332;
80% Identity
iTF_00929801;