Basic Information

Insect: Lydus trimaculatus
Gene Symbol: ham_2
Assembly: GCA_037414755.1
Location: JAZBGY010000174.1:52329-67542[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.056 3.1 8.1 0.4 2 23 264 286 263 286 0.93

2 9 0.00018 0.01 15.9 2.3 1 23 293 316 293 316 0.96

3 9 1.1e-07 6.4e-06 26.0 4.2 1 23 322 344 322 345 0.96

4 9 1.4e-06 7.7e-05 22.6 1.7 1 23 351 373 351 373 0.95

5 9 3.4e-05 0.0019 18.2 5.0 1 23 379 401 379 401 0.99

6 9 0.00068 0.038 14.1 0.7 2 21 409 428 408 429 0.95

7 9 1.2e-08 6.6e-07 29.1 0.7 1 23 835 857 835 857 0.98

8 9 1.5e-06 8.5e-05 22.5 1.6 1 23 863 886 863 886 0.97

9 9 1.2e-05 0.00067 19.7 3.4 1 23 892 914 892 914 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.056	3.1	8.1	0.4	2	23	264	286	263	286	0.93
2	9	0.00018	0.01	15.9	2.3	1	23	293	316	293	316	0.96
3	9	1.1e-07	6.4e-06	26.0	4.2	1	23	322	344	322	345	0.96
4	9	1.4e-06	7.7e-05	22.6	1.7	1	23	351	373	351	373	0.95
5	9	3.4e-05	0.0019	18.2	5.0	1	23	379	401	379	401	0.99
6	9	0.00068	0.038	14.1	0.7	2	21	409	428	408	429	0.95
7	9	1.2e-08	6.6e-07	29.1	0.7	1	23	835	857	835	857	0.98
8	9	1.5e-06	8.5e-05	22.5	1.6	1	23	863	886	863	886	0.97
9	9	1.2e-05	0.00067	19.7	3.4	1	23	892	914	892	914	0.99

Sequence Information

Coding Sequence: ATGACAGaAGGTAGCGACGACGAAATCGACCAACCCAATCAACAACCACAAGATTTATCATCATCGATGGATAGTACCATAATGGTACCAccacaattattagataattccATAGATTTAATTAAGGATAGTgaatatacaacaaataataataataataataatgaagagaaaatagcaacaaataaaataacaataaaatcaccaGAACAATTgtatgaaaaacaacaaatgacaAATGACGAATATTCTAATGAATCAATGAAGAACTATTTGAAtggtttaaaatttgatattacttatattaaaattagagaaataatattgacaacagcaacaataccAAGTGAAATTGATTTACGTGATAGTGGTGTTTATGCAAAAGAAACAATCACTAAAGGTACAAGATATGGACCGTTTCAAGGGAAATGGGCTGGTATTCCACAAGATGCACGATTCGCTTGGGAGgTAGTTGCTGGATCTGGTGTAAGGGGATGGCTTGATGGTACTTCTGAACATCACAATTGgttgaaattgattaaaagtACGGATAATAAGAATGGGGCCAATATGAGGTACTACTTGCAAGGTGGACAACTCTTATATGAGGCATTTGTTGATATTGCACCAGATACAGAATTGATTTTAAGTCCAAGAGAACCATTAAATCTTCAAGATATGTTTGGCGATTCAACATCAGCTGATGAGAAATCCGACCGTGAAACAGCATCACAACATAGTGGTACTGTTGATGAACgtgaagatgatgaagaagatgatTCTGAGATAAGATGTTGTGTTTGTGATCAACCATTCAATGATGTTGATAAACTTGATGAACATCTAATCAACAGACACAATTATAGACGTGACGAATATAGATGCGATTTATGTCCGAAATCATATTCACATCGACCctgtttaattaaacatcGAGCTGTAGTCCATGGTGAACAACGAAAATACCATTGTGAAAACTGTACAAAGatttttaccGATCCAAGTAATCTACAACGACATATACGGACACATCACGTTGGTGCACGTTCCCATGCTTGTCCAGAATGTGGGAAAACATTCGCTACGTCATCTGGACTTAAACAACATACACATATCCATTCTTCTGTAAAACCCTTTCAGTGTGAAGTTTGTTTCAAGGCCTATACGCAATTTTCGAATTTGTGCCGTCATAAACGTATGCACGCCGATTGTCGTATGCAAATCAAATGTGTTAAATGTGGTCAATCCTTCTCAACAGTGACATCATTATCAAAACATAAACGTTTCTGTGattcaacaacaccatcaccaACAGCTTTatcagcagcagcagcagcagcagcagccgCCGCCGCAGCAGCTGCCCAACAATTACCAGGAATGGCTAGTAATAATCCATTTTCAATGTATCGACCATCATCAGCAGCTGCTGCCGctgcagcagcagcagcagccgCCGCTTGTCATATACCATTTTTCTCACCACCATTTCCACCATATTCACAAATTTTCCATCCATCTggtccaccaccaccatttcTCAGTCCATTATTGTTTAATCCATTGCCAAAATTGAAgactgatgatgataattcaccaatgaagaaattgaaacgaTTGAGTCCTGAACGATTTTcaccaacaataaaagaacGATTCACACCACCAAGAATACCGTCGATTTCGGCTAAAGTTAGTCCACCGGCAGCTGAAGAAGCTAATACAACACCGTCACCGGCACGACCTATCACAAcgaataatcataataataataataacaataataataagggcGATGTAAAAGAACAAGAAGTTGGAATTGCAACAGTTGgaagaacaacaacaccagAAGAAGATGATAGTTTCCCGAGGGATTTATCGAGAAATTGTAATAGAAATGAACGATCTGAATCGGTTAGTAGTAGTGAAGAAGGTGAACAACCTTTAGATTTGAGTATTGGCTGGAAGAAATCACGAAATGATATAAAACCAACAACCCGACATGATATTCGTGATTTAATCACACCACCATTATCAAATAAAGAATCAACAACTGTAAAagatgaaaatattgaaattgttgatttggaTGAGGATAAAAAggataattatgaaaaaatttcaaatacacCACCAATGGCATATCCACGACCGATACATCCAATGTTATTAGAAATGTATCGACcgaattttcataattttccaacaacaacaacaacaacaccacagcaacaaaataatgatcgtttattatcaccatttgGACCGcatcgattttcttttttaaattcattaccaccaccaccaccacaaccaccttcccatcaccatcatcatcaccaccaccatcacaatCCACATCATCATCCGCATCATcgtaataatttcgatttgttACGGCcgaatttgcaaaattttggtAATGTAAAACCATTCCATGATGTtatacaacatcatcatcatcatcaacaacaacaagtacaaGGCAAAATTAAAGATCGTTATGCGTGTAAATTTTGCGGTAAAGTTTTTCCACGTTCAGCAAATTTAACACGACATTTACGTACACATACCGGTGAACAACCATATAAATGTCGTTATTGTGAACGTTCATTTAGTATATCAAGTAATTTACAACGGCATGTACGTAATATACATAATAAAGAGAAACCGTTCAAATGTCCATTGTGTGAACGTTGTTTTggacaacaaacaaatttagatcgacatttaaagaaacatgaagctgatgatggtagtggtggtgttgCTGTTGCCGATTCACCAGGTAGTAGTAATGAGAATGAACGTGAAGATGCTTGTTTTGATGAGATACGTTCATTTATGGGCAAAGTTACAAATACAGTCaacgataataattacaataataataataataatcaaacgaGAATTTATACACCGccttataataatattattgatgttgttggtaaagatgatgatgattcagaAGCTTATTCAGAAGAAACACCAAATGAGGATAATAAtcatgaaacaacaacaacaacaacaaaacatgaaaatgatgaaattctaaataataacgATCAAACAATTAGAATCTCAACTTAG
Protein Sequence: MTEGSDDEIDQPNQQPQDLSSSMDSTIMVPPQLLDNSIDLIKDSEYTTNNNNNNNEEKIATNKITIKSPEQLYEKQQMTNDEYSNESMKNYLNGLKFDITYIKIREIILTTATIPSEIDLRDSGVYAKETITKGTRYGPFQGKWAGIPQDARFAWEVVAGSGVRGWLDGTSEHHNWLKLIKSTDNKNGANMRYYLQGGQLLYEAFVDIAPDTELILSPREPLNLQDMFGDSTSADEKSDRETASQHSGTVDEREDDEEDDSEIRCCVCDQPFNDVDKLDEHLINRHNYRRDEYRCDLCPKSYSHRPCLIKHRAVVHGEQRKYHCENCTKIFTDPSNLQRHIRTHHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCEVCFKAYTQFSNLCRHKRMHADCRMQIKCVKCGQSFSTVTSLSKHKRFCDSTTPSPTALSAAAAAAAAAAAAAAQQLPGMASNNPFSMYRPSSAAAAAAAAAAAAACHIPFFSPPFPPYSQIFHPSGPPPPFLSPLLFNPLPKLKTDDDNSPMKKLKRLSPERFSPTIKERFTPPRIPSISAKVSPPAAEEANTTPSPARPITTNNHNNNNNNNNKGDVKEQEVGIATVGRTTTPEEDDSFPRDLSRNCNRNERSESVSSSEEGEQPLDLSIGWKKSRNDIKPTTRHDIRDLITPPLSNKESTTVKDENIEIVDLDEDKKDNYEKISNTPPMAYPRPIHPMLLEMYRPNFHNFPTTTTTTPQQQNNDRLLSPFGPHRFSFLNSLPPPPPQPPSHHHHHHHHHHNPHHHPHHRNNFDLLRPNLQNFGNVKPFHDVIQHHHHHQQQQVQGKIKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCRYCERSFSISSNLQRHVRNIHNKEKPFKCPLCERCFGQQTNLDRHLKKHEADDGSGGVAVADSPGSSNENEREDACFDEIRSFMGKVTNTVNDNNYNNNNNNQTRIYTPPYNNIIDVVGKDDDDSEAYSEETPNEDNNHETTTTTTKHENDEILNNNDQTIRIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00842097;
90% Identity: -
80% Identity: -