Ltri005830.1
Basic Information
- Insect
- Lydus trimaculatus
- Gene Symbol
- -
- Assembly
- GCA_037414755.1
- Location
- JAZBGY010000838.1:12820-19316[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0005 0.028 14.5 4.3 1 23 303 325 303 325 0.98 2 15 0.078 4.4 7.6 0.9 1 23 330 353 330 353 0.95 3 15 0.00035 0.019 15.1 0.1 1 23 359 381 359 381 0.95 4 15 4e-07 2.2e-05 24.3 0.6 1 23 387 410 387 410 0.98 5 15 0.0011 0.062 13.5 2.0 1 23 415 437 415 437 0.98 6 15 0.0033 0.18 12.0 5.8 1 23 446 468 446 468 0.99 7 15 0.00022 0.012 15.7 0.5 3 23 477 497 476 497 0.97 8 15 1.3e-05 0.00072 19.6 0.6 3 23 505 525 504 525 0.97 9 15 2.4e-07 1.3e-05 25.0 0.8 1 23 531 553 531 553 0.98 10 15 0.073 4.1 7.8 3.4 1 21 559 579 559 589 0.95 11 15 0.067 3.8 7.9 0.9 1 21 746 766 746 767 0.95 12 15 0.19 11 6.4 0.2 3 23 775 796 774 796 0.92 13 15 0.0092 0.52 10.6 1.5 3 23 802 822 801 822 0.97 14 15 0.0038 0.21 11.8 4.1 1 23 828 851 828 851 0.96 15 15 6.3e-06 0.00035 20.5 2.7 1 23 856 878 856 878 0.98
Sequence Information
- Coding Sequence
- ATGGagaatattgataatattatgCAATTGTGTCGTTTATGTTTAGTAAAGGAACAAGTTAATGTACCAATATTTGGTCAAAACAATGATATAGAAGAGATATCCGCGAAAATTCGTTCATGTCTACCGGTGAAGGTTTCCCTGGATGATAGTTTACCCAAAAAAATCTGTGATGATTGTTCCTACAAGTTAGATTTGCTATACGTCTTTAGAAATACAAGTATTAATTCGGAAAAACAGTTATATCAATGGTTGGAACAAGCTGGAATTTCAAAGGCggcagcaacagcagcagtTGTAGCAGCAGCtgcaacaacaccaacaacagcCTCCACAACATCTTTAATCACACAATCATCAGTAGATACCACAGTACCACCAGCACCTACTTCCATATTAGATAATGTAAATgatacaattacaaaatcagAAATTTCcgttaaacaagaaaaaagcGATTCAACCGCTGGTAGTGAATTATCAGCAGAAACACaagaatatttattacaacagcAGAAGCTTCCATATCAAGAAAGTTTTGGCGACTTTAGTACAGAAACAAATTCTGCTGATACAACAGAAGAGCCAGCTCGAAAGAAACCCAGACGAGCGGCTGCCTCAAAACCACCAATAAAAGATAATGAAAGTGATTCGGACCTGCCACCAACtaaagcTGAAGATGAtagtgaagaagaagaagatattgatgatattggtgatggtggtatggatgaggatgatgaagaagaagaggaTGATGGTCTTGATCATCCTGAATTTGTTGATGTACCTTCTACAAGTGCAGAAGAACAACCTGGACCATCTGGTGTCAATAAAGATCCCATCGCAGCACCGCTATCTGAGCATTTCATCATTGTTTTGAAGAAACCAAAATCAGTTGAAACATATAAATGTAATACGTGTTCCCGTACATATCTTACTAAAtcacaattacaaaaacataaacGTCTACATAGAGAACGATTATATGCCTGTCCACAATGTCCAAAAAAGTGGCGTTTCCCTTTTGAAGTTAAAAAACATCTTCATTCCGTTCATCTACCAAGAAAAACACATGTTTGTGATGTTTGcgggaaaatttttaaaacattaattggTTTAGGTGATCATATGGAGGGTCATAGAAttggttttaattataaatgtaatgAATGTGATGCAAAATTTAGACGACCTTATACATTACAAAATCACATTAAAGTTGAACATGAAGGTTTAAGATATCCATGTCAACAATGTAAGAAAGTATTTCGTACAGAACAAGCGTATAAATTCCATATTAAAACACATGATCCTGATTAtattaaagaaacatacaCATGTAAAATCTGTAGTAAAATATTAACACATAAAAGATCTTTCTATTATCATATGAAAAGTCAttcagataataataatgataatatgtGTGATATTTGTGGTTTACTTGTAACTACAAAAACTAGCTTAAGAAATCATATAAAAACACATTCAGGTATTAAAGAGGAAATTTGTGATACGTGTGGTAAAGcttatagaaataaaaaaagtttattgataCATCGACGTATTCACACAAATGAAAAACCATTTGTTTGTTCGTTATGTAATAAAGCTTTCTCTCAGAAAGGCACATTAAATGTTCATATGCGTTATCATACTGGTGAACGCCCACATAAATGTGATGTTTGTTTGAAGGGTTTTGTAACTGGTACATTATTGAAACGACATAAATGTTCCAaattatATGCACATCTTGAAACTCATAAAAccaatataattgttgatgaacaagatgaattaaatgatgaatatGTTGAGGAGATTGTTctaaattatgaaaatgagGAAATTGTTGAAGTTACCGATGATAATCCTGAATTAGTTTATATATTGGATGATTCACAATGTGTTAATGAGGTTGTtattgaagaagaaacagATACAATAGCATCATCAACAATAGCAAACaaagaacaacaattagataatgtaactattgttaaattagaaCATGGTTATGTAATACCGGAATCTATTGATACATTAATTAATGGTAAACAAAAATGTGTAACTATTAAAACACAACCATCTACAAGTAAAGTACAATATGGTAATCAATCGACAAAACCCCAATCATCACGTATACCCCAACCGAAACGTCATGTTGTACCAGATTTCTCATCAccaaattatatttatgttaatgCAAATGATGAGATTGATATACCGCATTATAAATGTTTACGTTGTGAACAgatctttataaataaatttgtattttttagaCATATTGAAAAAGGTAaatgttatataaataattgcgATGTGTGTAGTGCTACATTTATGAAAAATAGTgacttttattatcattatgttGTTGAACATACAGATCGAGCTATATGTAATTTTTGCTTTAGAACATTTATGTATGAGAAAAATGTTAAAGAACATATGTTAAGACATTTAGATCAATTTCGACATCGTTGTGATGAATGTAATAAAGGTTTCTATACAGTACGTGAATATagaaatcattataaaaatcgTCATATGGGTATAAGGCATACTTGTGATTATTGTAATCGTAGTTTTGCTGATGAATATTATTTTAGACGACATATTGCAACACATGAACAACAAACtaatattgttgtacaataa
- Protein Sequence
- MENIDNIMQLCRLCLVKEQVNVPIFGQNNDIEEISAKIRSCLPVKVSLDDSLPKKICDDCSYKLDLLYVFRNTSINSEKQLYQWLEQAGISKAAATAAVVAAAATTPTTASTTSLITQSSVDTTVPPAPTSILDNVNDTITKSEISVKQEKSDSTAGSELSAETQEYLLQQQKLPYQESFGDFSTETNSADTTEEPARKKPRRAAASKPPIKDNESDSDLPPTKAEDDSEEEEDIDDIGDGGMDEDDEEEEDDGLDHPEFVDVPSTSAEEQPGPSGVNKDPIAAPLSEHFIIVLKKPKSVETYKCNTCSRTYLTKSQLQKHKRLHRERLYACPQCPKKWRFPFEVKKHLHSVHLPRKTHVCDVCGKIFKTLIGLGDHMEGHRIGFNYKCNECDAKFRRPYTLQNHIKVEHEGLRYPCQQCKKVFRTEQAYKFHIKTHDPDYIKETYTCKICSKILTHKRSFYYHMKSHSDNNNDNMCDICGLLVTTKTSLRNHIKTHSGIKEEICDTCGKAYRNKKSLLIHRRIHTNEKPFVCSLCNKAFSQKGTLNVHMRYHTGERPHKCDVCLKGFVTGTLLKRHKCSKLYAHLETHKTNIIVDEQDELNDEYVEEIVLNYENEEIVEVTDDNPELVYILDDSQCVNEVVIEEETDTIASSTIANKEQQLDNVTIVKLEHGYVIPESIDTLINGKQKCVTIKTQPSTSKVQYGNQSTKPQSSRIPQPKRHVVPDFSSPNYIYVNANDEIDIPHYKCLRCEQIFINKFVFFRHIEKGKCYINNCDVCSATFMKNSDFYYHYVVEHTDRAICNFCFRTFMYEKNVKEHMLRHLDQFRHRCDECNKGFYTVREYRNHYKNRHMGIRHTCDYCNRSFADEYYFRRHIATHEQQTNIVVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -