Ltri008150.1
Basic Information
- Insect
- Lydus trimaculatus
- Gene Symbol
- -
- Assembly
- GCA_037414755.1
- Location
- JAZBGY010001456.1:19035-20641[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.019 1.1 9.6 2.3 2 20 119 137 118 139 0.94 2 11 1.7e-05 0.00098 19.1 0.5 1 23 148 170 148 170 0.98 3 11 1.6e-05 0.00089 19.3 1.7 3 23 189 209 187 209 0.97 4 11 8.5e-06 0.00048 20.1 2.5 1 23 217 239 217 239 0.97 5 11 0.0002 0.011 15.8 1.8 1 21 245 265 245 266 0.94 6 11 5.1e-05 0.0029 17.7 1.4 1 23 270 292 270 292 0.97 7 11 1.2e-06 6.8e-05 22.8 3.7 1 23 298 320 298 320 0.98 8 11 0.00026 0.014 15.5 7.0 1 23 326 348 326 348 0.99 9 11 8.4e-07 4.7e-05 23.3 0.4 1 23 354 376 354 376 0.98 10 11 1.1e-05 0.00064 19.7 0.3 1 23 380 402 380 402 0.98 11 11 0.00015 0.0086 16.2 0.1 1 23 410 433 410 433 0.97
Sequence Information
- Coding Sequence
- ATGGAAGTTGAAGAATCAAATCCAACCAACACTATCTATTTACTCGATAATCCACaattaattttcgataatgttgataataatgatggaaaaacTGGTGAAGATCCTATCAAACaagataatcaacaacaacaacaagatgatgatacaacaattaatgaacaaaatattaaagataagGATGGTCGTTTATATACgcgaaaatttgttaaaatcgataaattctggttagaatcaataaatgataaacaaccaataatacaacaatacataATTGATAATGGTAAAgtgaaaaaattaacaacagatgatttagaacaaattgatgataaatcgacaataattgaaataaatcaatgtcctatatgtaaattattgtttacaaattttgatgattataaaaaacataaatgttataataataattgtaataatgataaatttgaatgtaatgattgtaatttaatatttaacgaattagatgatttacgtaaacatttaaaacaacacaataaccatgatgatgataatagcaacaataaacaaaagaaaatgttaGTAAATTGCGAAATTTGTAATacaacattttcaacatttaaatcattaCGTTTACATCGTCGTATGCATGATCCGGTAAAAGAGCATGgttataattgtaaaacatgtaatcgtaaatttttcaatcaatcaaatttagagATGCATTTAAAAGCgcatacaaataataaaaaattcgcTTGTTCATATTGTAAAAAACCATTTGTAACGTATGAATCATTAAAAGAACATTTATGTAAAGAACGTATGTATGCATGTCAATATTGTGGTAGACGTTTTATACGTCCACATGAAAAAGTCAAACATGAACGTATACATACTGGTGAAAAACCACATGTATGCGAAATATGTGGTAAATCATTTcgtgttaattattgtttaacattaCATTTACGTACACATAGTGGTGCTAGACCATATCAATGTTTTACATGTGGTAAACGTTTTAAATCGCATAGTGTTtacaatcatcatttattaacaCATTCAGATATACGTAATTATAAATGTCCATATTGTCCGAAAGCATTTAAAACAAGTGTACAATTAGCTGGACATAAAAATAGTCATATAAAACCATTTACATGTACTGAATGTAATCGTCCATTTGCATCATTATATGCTGTTAGATCACATATGGAAACACATAAAcgtgataataatttacgttATGAATGTTGGATATGTGGTGCATTATATTCTAGAGCTTTTGCATTAAGAGATcatatgaaacaacaacatcaagataataataataataaaacaaaaattttaaatgttgaagAAGAAATTGATGCGGCTAATTCGATTTTAGTTAAAGAAGATGATATTATTTTAGGTTTAGATGGGACTGCcaacattgaaattattgaaagtgACTGTACTtga
- Protein Sequence
- MEVEESNPTNTIYLLDNPQLIFDNVDNNDGKTGEDPIKQDNQQQQQDDDTTINEQNIKDKDGRLYTRKFVKIDKFWLESINDKQPIIQQYIIDNGKVKKLTTDDLEQIDDKSTIIEINQCPICKLLFTNFDDYKKHKCYNNNCNNDKFECNDCNLIFNELDDLRKHLKQHNNHDDDNSNNKQKKMLVNCEICNTTFSTFKSLRLHRRMHDPVKEHGYNCKTCNRKFFNQSNLEMHLKAHTNNKKFACSYCKKPFVTYESLKEHLCKERMYACQYCGRRFIRPHEKVKHERIHTGEKPHVCEICGKSFRVNYCLTLHLRTHSGARPYQCFTCGKRFKSHSVYNHHLLTHSDIRNYKCPYCPKAFKTSVQLAGHKNSHIKPFTCTECNRPFASLYAVRSHMETHKRDNNLRYECWICGALYSRAFALRDHMKQQHQDNNNNKTKILNVEEEIDAANSILVKEDDIILGLDGTANIEIIESDCT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -