Ltri003737.1
Basic Information
- Insect
- Lydus trimaculatus
- Gene Symbol
- -
- Assembly
- GCA_037414755.1
- Location
- JAZBGY010000447.1:19410-22956[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.8e-05 0.0016 18.5 0.7 1 23 208 230 208 230 0.95 2 15 0.0012 0.066 13.4 1.1 3 23 238 258 237 258 0.99 3 15 0.00011 0.0061 16.6 0.1 1 23 377 399 377 399 0.98 4 15 0.0027 0.15 12.3 0.2 1 23 405 428 405 428 0.98 5 15 3.5e-07 2e-05 24.5 3.0 1 23 452 474 452 474 0.98 6 15 0.0046 0.26 11.5 0.0 1 23 487 509 487 509 0.94 7 15 0.66 37 4.7 1.1 1 23 515 538 515 538 0.96 8 15 0.06 3.4 8.0 1.9 2 19 546 563 546 564 0.96 9 15 0.00024 0.014 15.5 3.6 1 23 573 595 573 595 0.97 10 15 0.0035 0.2 11.9 0.3 2 23 601 622 600 622 0.96 11 15 9.1e-06 0.00051 20.0 0.4 1 23 630 652 630 652 0.98 12 15 0.004 0.22 11.7 0.2 3 23 660 680 658 680 0.97 13 15 0.00013 0.0071 16.4 0.3 1 23 686 708 686 709 0.95 14 15 0.036 2.1 8.7 1.5 1 23 723 745 723 745 0.96 15 15 0.0048 0.27 11.5 0.1 1 20 1102 1121 1102 1124 0.93
Sequence Information
- Coding Sequence
- ATGGAGGATAATTTTGCATTAACTTGGGAGGATTCCACAACTGTTGTACAAGGGGAAGAAGTTATTTGTAgtatagaaaatgaaatattaccTGAAGAAACTGAAGAATTCTCTGGTGTTGTTTGTGATGATGGACAAACAACAGAAATCACAAcagaacaacaaattgaagagGAAGTTATTGacgatgatggtggtggtgttgaagAAGGCGAAGAAGTTGTAGAAGATGAACATATCGTACAAGAAgttgttgaaacaattgataatgaaaCTGAAGTTGTACATCAAgagaatattgtttatttaactgATGATAATGTTATTGTAATGCAACCGGATGATGTTACTGCTACTACTGAACAtgatggtagtggtggtggtggtgatgaaattgttgaaactgGAAATGAGcaagtaacaacaacaaatgattttcaacaacattttatGGATTGTCAAGTATCTGAAGAGATTGTAACAGAACAATGGGATGAAAGTTGTCCAGAAGAGATTGTTGTTGGTAGTGAAGAAGCTGTTGGTGGTACAGaagaacaaacaaatgaagatttcGATATACCATTACCAACAGATCAAGATGAATATACAGCATCTAGACCATATCCATGTGATTTTTGTAGTCGACGTTTTCGTAAAAAAGcaaatttaatgaatcatATGGTGGCACATCAAACTGATCGTCCACATGGTTGTAATTTATGTGGTGTACGTTATATAAGAAAATGTGATttaatgaatcatttaaaAGTGCACGCTTATATACCAGAAACTGATGGTATTGAAGAAGATGATATCCAACAATTTGATGAATCCGATCAAGAgaaacataacaataataataataataataatatgaaaaaattacGATTTGGTAGTGGTAAAcgtaataaaaagaaaattaaagatgAATATGAGAATTATGAGAATGATGAAACTGGTGCATCCAGTTCAAAATCATATAATTATGTTGATGAAGATATGCGTTTAATGGAAGCAATGGAGAATAATGTTAAAACTGATTATAatgaatataataatgaatatatAACTGatcataataatcaacagATTGATGTACGTTATCCGATCACAGATCCACGTAAACCATTTGTATGTCAACATTGTGGTGTTGGTTTTGCTAGAGAGAAAGCATTAGCATCACATGCACGTATACATGGTGGTGATAGTCCATTTGAATGTCAAAAATGTGGTGAAATGTTTTGGGATTTAGCATTAATGCGTGAACATTTACGTACAAAACATGgtggtggtgatgatgatgatgatgatgaagatgatgattattCAGATGATGAAACCAAATATGGTACATTCTATTGTAGTGTATGTGGTTTATCATTTCATCGACAAGATAATTTGAAACGTCATCAACGTGTCCATATTAAAGAAGAATATGTTAATGATCATGAATTTGGTCATATATGTAATGTGTGTGGTGAATCTTTTCCGGAAGCATTAGATTTATTAGCACATGCTGAAATACATGCACGTACATCAGAACATCGTTGTATGATATGCGGTGAATTATGTACAGATGATCAATCTGTTGCTGTACatgtacaaacaaaacatGGTAAAAATTTACCACCAAATACATGTATGTTATGTGGACGTACATGTAAAGATCGTCGTACATTATTGAAACATTCATGGGAACATTCGAAAGAGAAAAGTTTTGCATGTTCAAAATGTGCAAAAACATTTCATAATAAAGCTAGATTAAAACGTCATATGTTATCACATCGTAATAAAGTTGTATCGTGTGATGTATGTGGTGAAGAATTTCCAGATGGACGATCATTAATGAATCATCGACATAGTCATAGTAGTTTATCAGGTCGGCAATTTCCATGTCGTGAATGTGGTAAAACGTTTGGTTCACGTAGTTCACAACAAATCCATATACGTATACATACTGGTGAACGTCCATATGGTTGTCGATTTTGTTGGAAAGCATTTGCTGATGGTGGTACATTAAGAAAACATGAACGTATACATACTGGTGAAAAGCCATATGCATGTGCTGTATGTCCGCGTGCATTCAATCAACGTGTTGTATTAAGAGAACATATACGTTCACATCATTCAGGACCAGATCCAAAATATTCACATAGTGTTACACCATATTGTTGTTCAGTATGTTCAGATATGTTTGCAACATCACAAGATTTAATTGTACATTTAATACATCATTGTGATATGAATACAGCAATGAAACGACAACCACAAGTTGGTCCAAGGAAGTATAAACGACGACGGAAATTGAAACCGCACGAATTGGAAATGATATCGAGTAAAaatatCTATACAGATTCAGAAGATGAACGTGAGACACGTAGAAAAAGTAGTAAGAAGGCGAAAAAAAATTCGCCAAAATCAAGTTTAAATGAATcatataatgatttttataatagttgtacatcaacaattgaaaatataaattcaattgttaattcaaaaacaacaacaacaaatatgaatTCAAAAACGAAacgtaaacaaaaaaatgatacatcatcatcaacagcagcaacaacaacggCATCGGTACCATCACGTCCGAAAATGATTCATACACAAAAAACCCGTATACCTGTTGAGACAGGTGAAGATGGTAAAGTAcgacataaaacaaaaacattagtAACACGTACACAACCAACTGAATTGAAATCATCAACTGGTGAACGTATACGACCACGTACAAAAAACGTTAGTTATCATATATTGAATAATGAGAAATTACCAATTGCCACGTTCCCAGAAGATGATCAAgctgttaataatttattaaaagatgaattaaataatagtaatactgaacaacaacaaaataacaatagtaatgGTGATATTGTAATGGAACAACAAACTGAACAAACACCAGAAGTTGGATCtgaacaaattattgaaagtgATAATGGTGCATTTCCAACCAATATTATCAAAGTAACATCAACACCAACacaattacataatttacGTCCTGGACGGCATTTGATTGTACCATGTAATAAAGTTGTACGTTTAGTTAAAGGTGGTATGattgtaacaaaaacaaaagagaaagagaaacgtaataatagtaataataataataataacaataataatgaaccgGAAAATATTCTACCAGatgttgaaacaacaaaagatgatggtgataataatagcgatattaataaaataaaacaggaaATTGTTGATCCAAGTCCATTACATGAATTAGCTGAAATATCAATGCAACATGCACAAAATATCTTTAAATGTGAGATGTGTAGTGCAGTATTCTCTGATAGAGGTAAACTGTTGGATCATGTGCCCATACATATATGA
- Protein Sequence
- MEDNFALTWEDSTTVVQGEEVICSIENEILPEETEEFSGVVCDDGQTTEITTEQQIEEEVIDDDGGGVEEGEEVVEDEHIVQEVVETIDNETEVVHQENIVYLTDDNVIVMQPDDVTATTEHDGSGGGGDEIVETGNEQVTTTNDFQQHFMDCQVSEEIVTEQWDESCPEEIVVGSEEAVGGTEEQTNEDFDIPLPTDQDEYTASRPYPCDFCSRRFRKKANLMNHMVAHQTDRPHGCNLCGVRYIRKCDLMNHLKVHAYIPETDGIEEDDIQQFDESDQEKHNNNNNNNNMKKLRFGSGKRNKKKIKDEYENYENDETGASSSKSYNYVDEDMRLMEAMENNVKTDYNEYNNEYITDHNNQQIDVRYPITDPRKPFVCQHCGVGFAREKALASHARIHGGDSPFECQKCGEMFWDLALMREHLRTKHGGGDDDDDDEDDDYSDDETKYGTFYCSVCGLSFHRQDNLKRHQRVHIKEEYVNDHEFGHICNVCGESFPEALDLLAHAEIHARTSEHRCMICGELCTDDQSVAVHVQTKHGKNLPPNTCMLCGRTCKDRRTLLKHSWEHSKEKSFACSKCAKTFHNKARLKRHMLSHRNKVVSCDVCGEEFPDGRSLMNHRHSHSSLSGRQFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPDPKYSHSVTPYCCSVCSDMFATSQDLIVHLIHHCDMNTAMKRQPQVGPRKYKRRRKLKPHELEMISSKNIYTDSEDERETRRKSSKKAKKNSPKSSLNESYNDFYNSCTSTIENINSIVNSKTTTTNMNSKTKRKQKNDTSSSTAATTTASVPSRPKMIHTQKTRIPVETGEDGKVRHKTKTLVTRTQPTELKSSTGERIRPRTKNVSYHILNNEKLPIATFPEDDQAVNNLLKDELNNSNTEQQQNNNSNGDIVMEQQTEQTPEVGSEQIIESDNGAFPTNIIKVTSTPTQLHNLRPGRHLIVPCNKVVRLVKGGMIVTKTKEKEKRNNSNNNNNNNNNEPENILPDVETTKDDGDNNSDINKIKQEIVDPSPLHELAEISMQHAQNIFKCEMCSAVFSDRGKLLDHVPIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00987317;
- 90% Identity
- -
- 80% Identity
- -