Ltri008027.1
Basic Information
- Insect
- Lydus trimaculatus
- Gene Symbol
- -
- Assembly
- GCA_037414755.1
- Location
- JAZBGY010001418.1:4616-10031[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00017 0.0096 16.0 3.3 1 23 319 341 319 341 0.97 2 12 0.00012 0.0066 16.5 0.6 1 23 343 366 343 366 0.96 3 12 3.2e-07 1.8e-05 24.6 1.5 3 23 435 455 434 455 0.98 4 12 0.0001 0.0057 16.7 0.4 1 23 461 483 461 483 0.97 5 12 0.00036 0.02 15.0 2.9 1 23 489 511 489 511 0.98 6 12 1e-05 0.00058 19.9 1.7 1 23 517 539 517 539 0.98 7 12 0.00014 0.0076 16.3 0.8 1 23 545 567 545 567 0.98 8 12 5.7e-07 3.2e-05 23.8 1.3 1 23 575 597 575 597 0.96 9 12 0.00035 0.02 15.0 0.2 1 23 603 625 603 625 0.97 10 12 1.4e-05 0.00076 19.5 1.3 1 23 631 653 631 653 0.98 11 12 0.0012 0.07 13.3 0.5 1 23 659 681 659 681 0.97 12 12 1.1e-05 0.00061 19.8 0.8 1 23 687 709 687 709 0.97
Sequence Information
- Coding Sequence
- ATGGCTACAGTAGACCCGGCACGATATAATGATTTATGTAGACTTTGTGCAACCAAAACTACAATGTTATTAGGTGTACACATATTCCAGAATGATGGTATAATAAGCCAATTACGTAAAAAAATCGAAACCTGTCTTCCTATACAAgtGCATGAAAGTGATGAACTACCAAAAATGGTATGCgagaattgtttatttaaattgaatttgttattagAATTTCGTGAGAAAACACTACGTACTGAACGCCTATtaattggtttaattaaaggaattaattcgaataaattagacgaccaacaacaacaacaaacaatcaatgttgtttcaattgattCTGACTTAATAATggtacaacatcaacaattattgaataatcaTCATGATATTGGTGAAATACACAGTTTACATCATCAATTAGGGAATAGGGAGCAGATGATTGTCGGTCATGAAATTATTCTAtcacaccatcatcatcatcatcataatttggataatatcgatttaaatcatcatGAATTAACAACACACGATCTATCGAATCATAGTCTACAAACACAGGATTCAATTTTAGTTGAAACTAATAATGGACGTTATAGTAGCGATAATTTAGaattgatacaacaacatcaacaattattgaacgATCAATTTCGTCTACATGGTGATGGTGATATTGGTTTGGAAACAGGATTGGAAAATCAAATTGTCACCAAAATCGATGAGAGTTTACATCATTCAGAAACCACCTatcatttaaatgataataaaaaacatgtAGATTACCATGATACAGATCTGAATAGTACAAatcataatgataaattagaatcattaaaaaatgatgatgatgataataatcgaattgATATATCCGATAAAGatgtttatattattcaaacaaatacaaattctgttgaatcaacaacaagtacaacaaatgaaaatgattggttttgttgtaatatttgtggTAAATCTTATGAAGAAGAGACAAACTTTCAAACTCATTATTCAACACATTTCCATAAATGCGATATATGTAATGCTGTTTTTATGAATAACGATCTATTAGAAACACATCGCAAAGAAATACATGAGAATACTATAGATGAAGAACATTTAGAACAGCAAAACGAAtcgaaatcaacaaataatgatgatgaagatgatgatagtgatagtaatgatttagatgatgatgatgatgatgatgatgatgatagtagtGGGAATAATGCAACAACTGAAATACCAGAAAAAGAGAATACTAGTAAAAAGAAAGTTTGGTCACCGAAAATCTGTACGGAATGTGGTAAATCGTATAAAaccaattataaattgaatgaaCATATGAGAAAGCATACAGGCGAGAAACCATACAAATGTACAAGTTGTGATAAAGAGTTTCGTTCAAAAATTGGATTAGCTCAACATGCTGCCAAACATACAggTAAATATGATTATTCTTGTTCAACATGCGGTAAAGGTTTCCAATGTAAAAGTTATTTAATGGTACATCAAAGGGTACATTCTGATATTAAACCATATCCATGTACAACATGTGGacgtaattttaaaacaaaacaatcattattggATCATACAAATCGACATTTAGGTGTTAAACCGTATATGTGTGAGATTTGTGGACGtggttttataacaaaagGTTTATGTAAAGCACATCAAAAAGTCCATACTGGTTTAGATAATCGGAAATATTTGTGTAAGgtttgtaataaaatgtttgtatCGAAAAGTTATCTACAAACACATTTACGTATACATACAGGTGAAAAACCGTTTATGTGTGAGGTTTGTGGTAAAGGTTTTCTCACAAAAGTTGATTTACGTATCCATACAACAATGCATACCGGTGAAAAATCGTATGTTTGTGAGATGTGTGGTAAGGCTTTTGCTAGACGTGATGCACTTAGATGTCATAGACGGTCACATACAGGTGAACGACCATATAgTTGTGATTTGTGTGGCCAAACATTTACGCAATTCACACCGATGGCTATCCATAAACGTTTACATACAGGTGAAAGACCGTATGCTTGTGAAACTTGTGGTAAAACATTTGTATCCAGATCAACAATGATGTCACATGCTAAAAAACATTTACAgtaa
- Protein Sequence
- MATVDPARYNDLCRLCATKTTMLLGVHIFQNDGIISQLRKKIETCLPIQVHESDELPKMVCENCLFKLNLLLEFREKTLRTERLLIGLIKGINSNKLDDQQQQQTINVVSIDSDLIMVQHQQLLNNHHDIGEIHSLHHQLGNREQMIVGHEIILSHHHHHHHNLDNIDLNHHELTTHDLSNHSLQTQDSILVETNNGRYSSDNLELIQQHQQLLNDQFRLHGDGDIGLETGLENQIVTKIDESLHHSETTYHLNDNKKHVDYHDTDLNSTNHNDKLESLKNDDDDNNRIDISDKDVYIIQTNTNSVESTTSTTNENDWFCCNICGKSYEEETNFQTHYSTHFHKCDICNAVFMNNDLLETHRKEIHENTIDEEHLEQQNESKSTNNDDEDDDSDSNDLDDDDDDDDDDSSGNNATTEIPEKENTSKKKVWSPKICTECGKSYKTNYKLNEHMRKHTGEKPYKCTSCDKEFRSKIGLAQHAAKHTGKYDYSCSTCGKGFQCKSYLMVHQRVHSDIKPYPCTTCGRNFKTKQSLLDHTNRHLGVKPYMCEICGRGFITKGLCKAHQKVHTGLDNRKYLCKVCNKMFVSKSYLQTHLRIHTGEKPFMCEVCGKGFLTKVDLRIHTTMHTGEKSYVCEMCGKAFARRDALRCHRRSHTGERPYSCDLCGQTFTQFTPMAIHKRLHTGERPYACETCGKTFVSRSTMMSHAKKHLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00987315;
- 90% Identity
- -
- 80% Identity
- -